BS28371.complete Sequence
1223 bp assembled on 2012-03-08
GenBank Submission: KX803114
> BS28371.complete
GAAGTTATCAGTCGACATGGAAACGGCCAGAATGGAGACGGCGATGGAGA
CACATTTTATGGCCAAAATGGGGAAGTTGACCCCCGATGAGGAGCTGCGA
CTGAAAATGATCCAAAGGGAGCGGGATCGAGAAAGGAAACGAATCAAGCG
AATGAATCCGGAGTACAGAAGGCTGGAGCAGGAACGTGACAGGGATAGGA
AAAAGGCTCGTAGGGCCAACGAGGCCTTCAGGCAGCTGGAAAAGCTAAGG
GATAAGATCCGAAAGGATCGAAAGAAGGGCTTGCTTGTCACGGATCCGAC
GCAGCTGCCGCCGGAATTCGCAGCCATGATACCGCCAGTGCCTGTGGTTA
AGCCCGAAGTAGGTGTGTCACCAGCCCCGCCCCCAGGCCAGCAGCAACCC
ACGCCACAGCTGCAGCAACAGCAGCAGCAACAGTTGCAGCAACACCAGCA
GGTGCCACAGCAACAGCAGCAGCATCAGCAGCCTCCGCCCACGCATCTGC
AGGAGCAGCAGTTGAGTCACCAGCTCGCGCATCAGCGGAACCGAATGATG
TCTAGCCAACTCACCCAACTGGCCACGCCCCCCGCCCATGCCTCGCACCT
ACAGCAGCTGAATAAGTTGCAGCAACTCTACCCGCCACGCAGCTTTGGCC
ACCCCGCTTTACCTATCGCTGGTGTGACGCTGATGCCGCAGCTTTGTCAT
CCCATCCTGCATCAGAACCTCAGCGCTACTCTGTATGCAGGTCCACCGAA
TGGCATCAAGCAGGAGTATGGACAGGATATCTCCGCCTCGGCTATGGCGG
CTGCGCAGGCGGCGGCACTGGCCTCGCTGAGGAATCCGCAACAGCAGCAG
CAACAGGATGATTCAGAAATGGTCATTAGTCTCGAACCGGAGATAGTTCT
CCAGACAGGTCCCGATGTAAATCCCGCCCAGCCACCTCCGCAGCAACAGC
ATCTTTTCAGCGCCCATCAGCACCAGCAGCAGCAACAGCAGCAGCAGCAG
CAGCAACATCATCTGCAGCAGCAACAGCACTGCAACATGTTCCAGCATAT
GGCCCCTCAGGCGCACATGCAACACATGCGCTCACTGCCGCCTCCGCCGC
CGCCCCCCTCGCTGACCTTGCCACCCCTGCCGCCCCCGCCACCTACAACT
CACCAGCAACAACAGCAACCTGCGCCGCCACAGCAACTGCAACATGCTCC
GCAGTGAAAGCTTTCTAGACCAT
BS28371.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:03:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5674-RD | 1191 | CG5674-PD | 1..1191 | 17..1207 | 5940 | 99.9 | Plus |
| CG5674-RA | 1470 | CG5674-PA | 336..1470 | 73..1207 | 5660 | 99.9 | Plus |
| CG5674-RE | 1338 | CG5674-PE | 208..1338 | 77..1207 | 5640 | 99.9 | Plus |
| CG5674-RA | 1470 | CG5674-PA | 1..155 | 17..168 | 395 | 85.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:03:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5674-RD | 2833 | CG5674-RD | 168..1358 | 17..1207 | 5940 | 99.9 | Plus |
| CG5674-RA | 3112 | CG5674-RA | 503..1637 | 73..1207 | 5660 | 99.9 | Plus |
| CG5674-RB | 3371 | CG5674-RB | 764..1896 | 75..1207 | 5650 | 99.9 | Plus |
| CG5674-RA | 3112 | CG5674-RA | 168..322 | 17..168 | 395 | 85.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:02:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 17972261..17973393 | 75..1207 | 5650 | 99.9 | Plus |
| 2L | 23513712 | 2L | 17963546..17963609 | 17..80 | 305 | 98.4 | Plus |
Blast to na_te.dros performed 2014-11-28 08:02:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6725..6949 | 965..1195 | 268 | 58.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6752..6949 | 839..1038 | 228 | 63.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2347..2535 | 834..1028 | 203 | 60.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2391..2491 | 929..1029 | 199 | 68.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2510 | 997..1204 | 168 | 57.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6785..6838 | 1151..1204 | 135 | 72.2 | Plus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 960..1035 | 1120..1195 | 118 | 66.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6764..6824 | 1151..1211 | 116 | 65.6 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1115..1174 | 1151..1211 | 113 | 67.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2604..2673 | 1140..1211 | 112 | 63.9 | Plus |
BS28371.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-08 17:47:41 Download gff for
BS28371.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5674-RD | 133..1322 | 17..1206 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:34:10 Download gff for
BS28371.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5674-RD | 168..1357 | 17..1206 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:09:48 Download gff for
BS28371.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5674-RD | 168..1357 | 17..1206 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:09:48 Download gff for
BS28371.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 17963546..17963605 | 17..76 | 100 | -> | Plus |
| 2L | 17972263..17973392 | 77..1206 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:34:10 Download gff for
BS28371.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 17963546..17963605 | 17..76 | 100 | -> | Plus |
| arm_2L | 17972263..17973392 | 77..1206 | 99 | | Plus |
BS28371.pep Sequence
Translation from 16 to 1206
> BS28371.pep
METARMETAMETHFMAKMGKLTPDEELRLKMIQRERDRERKRIKRMNPEY
RRLEQERDRDRKKARRANEAFRQLEKLRDKIRKDRKKGLLVTDPTQLPPE
FAAMIPPVPVVKPEVGVSPAPPPGQQQPTPQLQQQQQQQLQQHQQVPQQQ
QQHQQPPPTHLQEQQLSHQLAHQRNRMMSSQLTQLATPPAHASHLQQLNK
LQQLYPPRSFGHPALPIAGVTLMPQLCHPILHQNLSATLYAGPPNGIKQE
YGQDISASAMAAAQAAALASLRNPQQQQQQDDSEMVISLEPEIVLQTGPD
VNPAQPPPQQQHLFSAHQHQQQQQQQQQQQHHLQQQQHCNMFQHMAPQAH
MQHMRSLPPPPPPPSLTLPPLPPPPPTTHQQQQQPAPPQQLQHAPQ*
BS28371.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:51:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5674-PD | 396 | CG5674-PD | 1..396 | 1..396 | 2103 | 100 | Plus |
| CG5674-PE | 445 | CG5674-PE | 1..445 | 1..396 | 2043 | 89 | Plus |
| CG5674-PA | 489 | CG5674-PA | 113..489 | 20..396 | 2006 | 100 | Plus |
| CG5674-PB | 152 | CG5674-PB | 1..116 | 1..87 | 276 | 51.7 | Plus |
| ptip-PA | 2294 | CG32133-PA | 560..963 | 21..396 | 258 | 26.1 | Plus |
