BS28372.complete Sequence
1238 bp assembled on 2012-03-08
GenBank Submission: KX803755
> BS28372.complete
GAAGTTATCAGTCGACATGTTCCGCAGCAACTTGGAGGGCAGTGGCGCAG
CAGCAGTAGGTGTTGCAAATCCCCCCTCGTTGGCTCAGTCTGGAAAGATT
TTCCAATTGCAGGATAACTTTTCTGCTTTTCACGCCAGAGGAGGGCTCAA
CATTCTGGGCCTGCAGGACATGTATTTGGATACCAGTGGGGCCAACTCGT
CGGCCACTTTGAGTCCGCCCATTACGCCGGTGACCCCTGACCCGTCGACG
TCTGCGCAGTCGACGCACTTCCCTTTTCTGGCCGACAGCGCAGCCACCGC
CAATTCGCTCCTTATGCAGCGACAGTACCACTACCACTTGCTGCTCCAGC
AGCAGCAGCAACTGGCCATGGCGCAGCACCAATTGGCGCTGGCTGCATCA
GCGGCAGCGGCTAGTGCGAGTCACCAGCAAACGGACGAGATTGCGCGATC
CTTGAAAATCTTTGCGCAGGTGACGACGGGCGCAGCAGAAAATGCGGCTG
GCTCGATGCAGGATGTGATGCAGGAGTTCGCGACCAATGGCTATGCCAGC
GATGATCTCGGTCGCATGTCCTACGGGAGTGCTCCGCCACAGGTGCAAAT
GCCACCGCAGCAGCAGCATCAGCAACAGCAGGGGCTGCACCTGCCACTGG
GCCGCAATCCTGCCCAGCTGCAGACCAATGGCGGCAACTTAATGCCCATT
CCACTCGCCACCCACTGGCTGAACAACTACCGGGAGCATCTGAACAACGT
GTGGCGAAACATGTCGTATATACCAGCCGCTCCCAATACAATGGGTTTGC
AGGCCCAAACAGCGGCCACTGTGTCCACCAATCTCGGCGTGGGAATGGGT
CTGGGATTGCCCGTGCAGGGCGAACAGCTGCGCGGAGCTTCCAATTCCAG
TAACAATAATAACAACAACAACAAGGTGTACAAGCGTTACAACAGCAAGG
CCAAAGAGATCAGCCGCCACTGCGTCTTTTGTGAGAATAACAACGAACCA
GAGGCGGTTATCAATAGCCACTCAGTGCGAGATAACTTTAACCGAGTGCT
GTGCCCCAAACTACGCACCTACGTGTGCCCCATCTGCGGGGCATCTGGGG
ACTCGGCGCACACGATTAAGTACTGCCCCAAGAAGCCGATCATCACCATG
GAGGATGCGATCAAGGCGGAATCGTTCCGCCTAGCCAAGAGCAGTTACTA
CAAGCAACAGATGAAGGTTTAGAAGCTTTCTAGACCAT
BS28372.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:03:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nos-RA | 1206 | CG5637-PA | 1..1206 | 17..1222 | 6030 | 100 | Plus |
| nos-RB | 1149 | CG5637-PB | 40..1149 | 113..1222 | 5550 | 100 | Plus |
| nos-RB | 1149 | CG5637-PB | 1..40 | 17..56 | 200 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:03:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nos-RA | 2349 | CG5637-RA | 259..1470 | 12..1223 | 6045 | 99.9 | Plus |
| nos-RB | 2292 | CG5637-RB | 303..1413 | 113..1223 | 5555 | 100 | Plus |
| nos-RB | 2292 | CG5637-RB | 259..303 | 12..56 | 210 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:03:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19157496..19157972 | 12..488 | 2370 | 99.8 | Plus |
| 3R | 32079331 | 3R | 19158513..19158985 | 486..958 | 2365 | 100 | Plus |
| 3R | 32079331 | 3R | 19159057..19159323 | 957..1223 | 1335 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 08:03:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6758..6898 | 590..732 | 161 | 58 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2325..2495 | 584..750 | 160 | 59 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6737..6794 | 590..647 | 155 | 74.1 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1061..1124 | 584..647 | 140 | 68.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6776..6886 | 317..430 | 138 | 61.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6727..6773 | 601..647 | 136 | 76.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6725..6829 | 584..687 | 135 | 60 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6767..6856 | 584..673 | 134 | 63.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2343..2397 | 587..641 | 131 | 70.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6779..6819 | 590..630 | 124 | 78 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2810..2857 | 316..363 | 123 | 72.9 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1105..1157 | 595..647 | 121 | 69.8 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1073..1147 | 584..657 | 120 | 64 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6782..6893 | 584..688 | 118 | 62.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6814..6860 | 316..362 | 118 | 72.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1536..1587 | 587..635 | 117 | 75 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2397..2448 | 596..647 | 116 | 69.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2439..2490 | 590..641 | 116 | 69.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6880..6938 | 583..641 | 115 | 66.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6716..6769 | 597..649 | 114 | 70.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6779..6842 | 584..647 | 113 | 64.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6827..6923 | 587..682 | 113 | 58.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2376..2501 | 898..1025 | 112 | 57.4 | Plus |
BS28372.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-08 17:47:41 Download gff for
BS28372.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nos-RA | 267..1467 | 22..1222 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:34:16 Download gff for
BS28372.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nos-RA | 269..1469 | 22..1222 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:09:54 Download gff for
BS28372.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nos-RA | 269..1469 | 22..1222 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:09:54 Download gff for
BS28372.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19157506..19157972 | 22..488 | 100 | -> | Plus |
| 3R | 19158516..19158985 | 489..958 | 100 | -> | Plus |
| 3R | 19159059..19159322 | 959..1222 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:34:16 Download gff for
BS28372.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14983228..14983694 | 22..488 | 100 | -> | Plus |
| arm_3R | 14984238..14984707 | 489..958 | 100 | -> | Plus |
| arm_3R | 14984781..14985044 | 959..1222 | 100 | | Plus |
BS28372.pep Sequence
Translation from 16 to 1221
> BS28372.pep
MFRSNLEGSGAAAVGVANPPSLAQSGKIFQLQDNFSAFHARGGLNILGLQ
DMYLDTSGANSSATLSPPITPVTPDPSTSAQSTHFPFLADSAATANSLLM
QRQYHYHLLLQQQQQLAMAQHQLALAASAAAASASHQQTDEIARSLKIFA
QVTTGAAENAAGSMQDVMQEFATNGYASDDLGRMSYGSAPPQVQMPPQQQ
HQQQQGLHLPLGRNPAQLQTNGGNLMPIPLATHWLNNYREHLNNVWRNMS
YIPAAPNTMGLQAQTAATVSTNLGVGMGLGLPVQGEQLRGASNSSNNNNN
NNKVYKRYNSKAKEISRHCVFCENNNEPEAVINSHSVRDNFNRVLCPKLR
TYVCPICGASGDSAHTIKYCPKKPIITMEDAIKAESFRLAKSSYYKQQMK
V*
BS28372.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:51:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nos-PA | 401 | CG5637-PA | 1..401 | 1..401 | 2086 | 100 | Plus |
| nos-PB | 382 | CG5637-PB | 1..382 | 1..401 | 1962 | 95.3 | Plus |
