BS28373.complete Sequence
1724 bp assembled on 2012-04-11
GenBank Submission: KX801793
> BS28373.complete
GAAGTTATCAGTCGACATGATGGCCAAGTGGCTCCTTGGCCTTTGGCTGG
CGATCCTGCTAGTGGATCGACCCGGGGCTAAAGCTTATCGATCAGGCAGT
GGCTACCACAGCGAGCAGTCGGAACCAGTTGGCTTATCAGCAACAGGGAA
CGCACACTCGAGTTACGGAGGCGACCAGCAGCAGCCTATTTACCATCGGG
ATTCGGCATGCCCGCCGCATTTTACGGGTCTGGTTGCATATCCCCACGAC
TGTCATCGCTATGTGAACTGCTTCGATGGCAGCCCCACCATTCAGACGTG
TTCGCCCGGAACTCTGTTCAATGACAGGACCCAGGTGTGCGATCATCCCA
GCAATGTGGTTTGCCCTTCAGCGGAATCTGCATCTACTCGACTGGGAAGA
CTTAGGCAATTAGATAGTGAACCCAAGTGTCAACCGGGAGTGAATGGATT
GCAACCGCATCCTTCGGATTGCAGCAAGTTTCTTAACTGCGCCAATGGTC
AAGCTTTTATTATGGACTGCGCACCAGGAACTGCTTTTAGTCCAGCATCA
CTGGTATGTGTGCACAAGGATTTGGCCAAATGCGGATCGGGAACTGGTGC
AGTACGAGATGATACCTCCGGCACCGGCTACCCTGCGTTGCCTTTTGATG
ACTTGGGCTGTCCACCCGGTACACGTGGGCTTCGTCCACATCCGCACGAC
GTGCACAAGTATTTGAGGTGCGGAATTGGGGTTAAGCCTCAGGTGGAACA
GTGTCCACGGGGCCACATCTTCGATGGCTCCTCTTCGGTATGTGTGTATT
CTGACTCCCCTCGGACCTCCTCTTCCTCCTTCACGTCGGCTGAGATTCAG
GTCAACTATCTCTTGTGTCCAGTGGGAGCCGTTGGCCAATTTGTTCATCC
CTTTGATCAAACAAAATTCCTTAGTTGTAAGGATGGTAAATCGGCTGTGC
AAAACTGCCAACCTAATTATGTGTTTAGCATATCGAGGCGCTACTGTCAG
TTAAAAGCACAATTAGCCTTTACCGACTATGTCACATTAATTATCTCCGA
AATCAGCTATGAGTATTCACTTATCCTTAATGCCTGTCCTGGTAACATCA
ACGGCATCTTCTTGTATCCCTACGATGCTAAAAAGTACGTTCAGTGCTCG
TCTGGTGGCAGAATGTCCATCCTAAGTTGTGGCCCCCAGATGGCATTCAG
TGTATCCCAAAGAAGTTGTCTTCCAAGTCATCAAGTGCACATATCTGATC
GGGTGCAGTTCTGGCAGGAAGTCCAAGTTCAGACCACTTATACTTCTCAA
GACTTACGGGGAAATGTTCAAAGCCAGCTGTCTTCACTTAGATCGTGTCC
ACCCAATGTCCAGAAGAATTACCCTTATCCATTCCATGCTGGCCACTATG
TCAGGTGCCAATATGGAGCATTAGAGATCATATGCTGTCCCACTGGACAG
CTTTACAGCCTCTCCCAGCGTCAATGTGTGCCTCGTAGCCTTCTCTCTGC
ACATGATTACTTGGATTACTCCTATATCAGTGCTGAACTTTCCACTGAGT
TTATGGTGGATCGTTCGACGCTTTCTTGTCCTCCACAAGCACAGGGACTC
TATCTGCATCCCTTCGATTGCACCAAGTATGTCAGGTGCTGGAATCAGCA
GACCTTCATTGAGAGTTGTGTAGTATGTGCCTATGCAATATTAAGAACAA
TTAAATAAAAGCTTTCTAGACCAT
BS28373.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:44:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tequila-RC | 1692 | CG4821-PC | 1..1692 | 17..1708 | 8445 | 99.9 | Plus |
| Tequila-RG | 8379 | CG4821-PG | 1..1653 | 17..1669 | 8250 | 99.9 | Plus |
| Tequila-RF | 7140 | CG4821-PF | 1..1653 | 17..1669 | 8250 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:44:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tequila-RC | 2263 | CG4821-RC | 137..1830 | 17..1710 | 8455 | 99.9 | Plus |
| Tequila-RG | 8628 | CG4821-RG | 137..1789 | 17..1669 | 8250 | 99.9 | Plus |
| Tequila-RF | 7389 | CG4821-RF | 137..1789 | 17..1669 | 8250 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:44:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9075064..9075623 | 68..627 | 2785 | 99.8 | Plus |
| 3L | 28110227 | 3L | 9076319..9076795 | 1068..1544 | 2385 | 100 | Plus |
| 3L | 28110227 | 3L | 9076020..9076265 | 822..1067 | 1230 | 100 | Plus |
| 3L | 28110227 | 3L | 9075671..9075866 | 626..821 | 980 | 100 | Plus |
| 3L | 28110227 | 3L | 9076858..9077023 | 1545..1710 | 830 | 100 | Plus |
| 3L | 28110227 | 3L | 9074779..9074829 | 17..67 | 255 | 100 | Plus |
| 3L | 28110227 | 3L | 4328784..4328828 | 1666..1710 | 225 | 100 | Plus |
| 3L | 28110227 | 3L | 11564834..11564877 | 1667..1710 | 220 | 100 | Plus |
| 3L | 28110227 | 3L | 17524494..17524536 | 1710..1668 | 215 | 100 | Minus |
| Y | 3667352 | Y | 3444206..3444248 | 1710..1668 | 215 | 100 | Minus |
| X | 23542271 | X | 1033406..1033448 | 1668..1710 | 215 | 100 | Plus |
| 3R | 32079331 | 3R | 17509275..17509317 | 1668..1710 | 215 | 100 | Plus |
| 3R | 32079331 | 3R | 30375593..30375635 | 1668..1710 | 215 | 100 | Plus |
| 2R | 25286936 | 2R | 23537106..23537148 | 1710..1668 | 215 | 100 | Minus |
| 2R | 25286936 | 2R | 24184677..24184719 | 1710..1668 | 215 | 100 | Minus |
| 2R | 25286936 | 2R | 24655102..24655144 | 1710..1668 | 215 | 100 | Minus |
| 3L | 28110227 | 3L | 9533808..9533849 | 1669..1710 | 210 | 100 | Plus |
| 3L | 28110227 | 3L | 9540830..9540871 | 1669..1710 | 210 | 100 | Plus |
| 3L | 28110227 | 3L | 11571889..11571930 | 1669..1710 | 210 | 100 | Plus |
| 3L | 28110227 | 3L | 17517474..17517515 | 1710..1669 | 210 | 100 | Minus |
| 3L | 28110227 | 3L | 1047972..1048013 | 1710..1669 | 210 | 100 | Minus |
| 3L | 28110227 | 3L | 19820780..19820821 | 1710..1669 | 210 | 100 | Minus |
| 3L | 28110227 | 3L | 19827805..19827846 | 1710..1669 | 210 | 100 | Minus |
| 3L | 28110227 | 3L | 20590119..20590160 | 1669..1710 | 210 | 100 | Plus |
| 3L | 28110227 | 3L | 21243800..21243841 | 1669..1710 | 210 | 100 | Plus |
| 3L | 28110227 | 3L | 21250824..21250865 | 1669..1710 | 210 | 100 | Plus |
| 3L | 28110227 | 3L | 1055120..1055161 | 1710..1669 | 210 | 100 | Minus |
| 3L | 28110227 | 3L | 1226756..1226797 | 1669..1710 | 210 | 100 | Plus |
| 3L | 28110227 | 3L | 4335747..4335788 | 1669..1710 | 210 | 100 | Plus |
| 3L | 28110227 | 3L | 9083971..9084012 | 1669..1710 | 210 | 100 | Plus |
| 3L | 28110227 | 3L | 9131074..9131115 | 1710..1669 | 210 | 100 | Minus |
| 3L | 28110227 | 3L | 26078158..26078199 | 1710..1669 | 210 | 100 | Minus |
| 3L | 28110227 | 3L | 26084924..26084965 | 1710..1669 | 210 | 100 | Minus |
| Y | 3667352 | Y | 3437154..3437195 | 1710..1669 | 210 | 100 | Minus |
| X | 23542271 | X | 296376..296417 | 1710..1669 | 210 | 100 | Minus |
| X | 23542271 | X | 303434..303475 | 1710..1669 | 210 | 100 | Minus |
| X | 23542271 | X | 551477..551518 | 1669..1710 | 210 | 100 | Plus |
| X | 23542271 | X | 558499..558540 | 1669..1710 | 210 | 100 | Plus |
| X | 23542271 | X | 1040466..1040507 | 1669..1710 | 210 | 100 | Plus |
| X | 23542271 | X | 3987390..3987431 | 1710..1669 | 210 | 100 | Minus |
| X | 23542271 | X | 3994452..3994493 | 1710..1669 | 210 | 100 | Minus |
| X | 23542271 | X | 5524896..5524937 | 1669..1710 | 210 | 100 | Plus |
| X | 23542271 | X | 5528217..5528258 | 1669..1710 | 210 | 100 | Plus |
| X | 23542271 | X | 10138270..10138311 | 1669..1710 | 210 | 100 | Plus |
| X | 23542271 | X | 10145230..10145271 | 1669..1710 | 210 | 100 | Plus |
| X | 23542271 | X | 19136607..19136648 | 1669..1710 | 210 | 100 | Plus |
| X | 23542271 | X | 19142988..19143029 | 1669..1710 | 210 | 100 | Plus |
| X | 23542271 | X | 21641684..21641725 | 1710..1669 | 210 | 100 | Minus |
| X | 23542271 | X | 21648738..21648779 | 1710..1669 | 210 | 100 | Minus |
| 3R | 32079331 | 3R | 1457107..1457148 | 1710..1669 | 210 | 100 | Minus |
| 3R | 32079331 | 3R | 3129470..3129511 | 1710..1669 | 210 | 100 | Minus |
| 3R | 32079331 | 3R | 3136479..3136520 | 1710..1669 | 210 | 100 | Minus |
| 3R | 32079331 | 3R | 15102992..15103033 | 1710..1669 | 210 | 100 | Minus |
| 3R | 32079331 | 3R | 15109709..15109750 | 1710..1669 | 210 | 100 | Minus |
| 3R | 32079331 | 3R | 15601659..15601700 | 1710..1669 | 210 | 100 | Minus |
| 3R | 32079331 | 3R | 15608642..15608683 | 1710..1669 | 210 | 100 | Minus |
| 3R | 32079331 | 3R | 17516285..17516326 | 1669..1710 | 210 | 100 | Plus |
| 3R | 32079331 | 3R | 27140570..27140611 | 1669..1710 | 210 | 100 | Plus |
| 3R | 32079331 | 3R | 27147609..27147650 | 1669..1710 | 210 | 100 | Plus |
| 3R | 32079331 | 3R | 30382648..30382689 | 1669..1710 | 210 | 100 | Plus |
| 2R | 25286936 | 2R | 3694925..3694966 | 1710..1669 | 210 | 100 | Minus |
| 2R | 25286936 | 2R | 3701934..3701975 | 1710..1669 | 210 | 100 | Minus |
| 2R | 25286936 | 2R | 23530068..23530109 | 1710..1669 | 210 | 100 | Minus |
| 2R | 25286936 | 2R | 23914826..23914867 | 1710..1669 | 210 | 100 | Minus |
| 2R | 25286936 | 2R | 23921879..23921920 | 1710..1669 | 210 | 100 | Minus |
| 2R | 25286936 | 2R | 24147564..24147605 | 1710..1669 | 210 | 100 | Minus |
| 2R | 25286936 | 2R | 24154602..24154643 | 1710..1669 | 210 | 100 | Minus |
| 2R | 25286936 | 2R | 24177730..24177771 | 1710..1669 | 210 | 100 | Minus |
| 2R | 25286936 | 2R | 24648083..24648124 | 1710..1669 | 210 | 100 | Minus |
| U | 3151297 | U | 1606555..1606596 | 1710..1669 | 210 | 100 | Minus |
| Ymm | 880023 | Ymm | 517497..517538 | 1669..1710 | 210 | 100 | Plus |
| Ymm | 880023 | Ymm | 595899..595940 | 1669..1710 | 210 | 100 | Plus |
| 3L | 28110227 | 3L | 1219647..1219687 | 1670..1710 | 205 | 100 | Plus |
| U | 3151297 | U | 1077076..1077112 | 1710..1674 | 185 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 04:44:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 412 | 7567 | 412 412 7567bp | 7046..7095 | 1661..1710 | 214 | 92 | Plus |
| 412 | 7567 | 412 412 7567bp | 1..42 | 1669..1710 | 210 | 100 | Plus |
BS28373.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-11 12:37:40 Download gff for
BS28373.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tequila-RC | 135..1824 | 17..1706 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:19:51 Download gff for
BS28373.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tequila-RC | 135..1824 | 17..1706 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:35:48 Download gff for
BS28373.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tequila-RC | 137..1826 | 17..1706 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:35:48 Download gff for
BS28373.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9076020..9076265 | 822..1067 | 100 | -> | Plus |
| 3L | 9074779..9074829 | 17..67 | 100 | -> | Plus |
| 3L | 9075064..9075622 | 68..626 | 99 | -> | Plus |
| 3L | 9075672..9075866 | 627..821 | 100 | -> | Plus |
| 3L | 9076319..9076795 | 1068..1544 | 100 | -> | Plus |
| 3L | 9076858..9077019 | 1545..1706 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:19:51 Download gff for
BS28373.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9067879..9067929 | 17..67 | 100 | -> | Plus |
| arm_3L | 9068164..9068722 | 68..626 | 99 | -> | Plus |
| arm_3L | 9068772..9068966 | 627..821 | 100 | -> | Plus |
| arm_3L | 9069120..9069365 | 822..1067 | 100 | -> | Plus |
| arm_3L | 9069419..9069895 | 1068..1544 | 100 | -> | Plus |
| arm_3L | 9069958..9070119 | 1545..1706 | 100 | | Plus |
BS28373.pep Sequence
Translation from 16 to 1707
> BS28373.pep
MMAKWLLGLWLAILLVDRPGAKAYRSGSGYHSEQSEPVGLSATGNAHSSY
GGDQQQPIYHRDSACPPHFTGLVAYPHDCHRYVNCFDGSPTIQTCSPGTL
FNDRTQVCDHPSNVVCPSAESASTRLGRLRQLDSEPKCQPGVNGLQPHPS
DCSKFLNCANGQAFIMDCAPGTAFSPASLVCVHKDLAKCGSGTGAVRDDT
SGTGYPALPFDDLGCPPGTRGLRPHPHDVHKYLRCGIGVKPQVEQCPRGH
IFDGSSSVCVYSDSPRTSSSSFTSAEIQVNYLLCPVGAVGQFVHPFDQTK
FLSCKDGKSAVQNCQPNYVFSISRRYCQLKAQLAFTDYVTLIISEISYEY
SLILNACPGNINGIFLYPYDAKKYVQCSSGGRMSILSCGPQMAFSVSQRS
CLPSHQVHISDRVQFWQEVQVQTTYTSQDLRGNVQSQLSSLRSCPPNVQK
NYPYPFHAGHYVRCQYGALEIICCPTGQLYSLSQRQCVPRSLLSAHDYLD
YSYISAELSTEFMVDRSTLSCPPQAQGLYLHPFDCTKYVRCWNQQTFIES
CVVCAYAILRTIK*
BS28373.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:20:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tequila-PC | 563 | CG4821-PC | 1..563 | 1..563 | 3085 | 100 | Plus |
| Tequila-PG | 2792 | CG4821-PG | 1..551 | 1..551 | 3026 | 100 | Plus |
| Tequila-PF | 2379 | CG4821-PF | 1..551 | 1..551 | 3026 | 100 | Plus |
| Tequila-PD | 1450 | CG4821-PD | 1..292 | 1..280 | 1127 | 75 | Plus |
| Tequila-PG | 2792 | CG4821-PG | 443..972 | 64..551 | 1111 | 44.6 | Plus |
| Tequila-PF | 2379 | CG4821-PF | 443..972 | 64..551 | 1111 | 44.6 | Plus |
| Tequila-PG | 2792 | CG4821-PG | 520..1000 | 64..501 | 609 | 31.1 | Plus |
| Tequila-PF | 2379 | CG4821-PF | 520..1000 | 64..501 | 609 | 31.1 | Plus |
| Tequila-PG | 2792 | CG4821-PG | 138..638 | 65..551 | 608 | 29.9 | Plus |
| Tequila-PF | 2379 | CG4821-PF | 138..638 | 65..551 | 608 | 29.9 | Plus |
| Tequila-PG | 2792 | CG4821-PG | 605..1047 | 62..460 | 427 | 26.3 | Plus |
| Tequila-PF | 2379 | CG4821-PF | 605..1047 | 62..460 | 427 | 26.3 | Plus |
| Tequila-PG | 2792 | CG4821-PG | 1322..1531 | 282..501 | 323 | 33.2 | Plus |
| Tequila-PF | 2379 | CG4821-PF | 1322..1531 | 282..501 | 323 | 33.2 | Plus |
| Tequila-PG | 2792 | CG4821-PG | 1324..1504 | 357..551 | 226 | 32.3 | Plus |
| Tequila-PF | 2379 | CG4821-PF | 1324..1504 | 357..551 | 226 | 32.3 | Plus |
| Tequila-PG | 2792 | CG4821-PG | 1324..1537 | 138..347 | 199 | 25.6 | Plus |
| Tequila-PF | 2379 | CG4821-PF | 1324..1537 | 138..347 | 199 | 25.6 | Plus |
| CG7248-PA | 796 | CG7248-PA | 28..414 | 26..403 | 184 | 22 | Plus |
| Tequila-PD | 1450 | CG4821-PD | 41..181 | 191..327 | 176 | 29.6 | Plus |
