BS28375.complete Sequence
1346 bp assembled on 2012-04-25
GenBank Submission: KX803047
> BS28375.complete
GAAGTTATCAGTCGACATGCTACCGCTCTTTGGGACCATGCCGAATGGCG
TCAGTTTGCCAAATCACCCGAATTTCCTCAACCAATTGGCAGCTGCAATT
TCCACGGCGGCCTCGAGCACATCTGTCGTGGGAAATCCCTCTTCGCCCCC
CAAACAGATCCAGAATAAGATGGCAAAACAACAACAACAACCACAGGGCA
GTGCGCCCATGGATCTGGAGAATGAGAACGAACACTCTGCGGATGTGAGC
TCCTCGACGATGCACAAGGAACCCAAGTTGCAGGCCACATCCAACTCGCT
CACTCTGCCCGATTCGACGCAACTATACCTGAATGGCTTGGTGCACACAC
CACCTGGATATCTGTATTTTCCGGCCACCCAAGCGGGTGGTGCTACTGCA
CCCGGCAATCCATCCTCGGCTGCAGGGGGATCCACGCCGGCAGCTTCAGC
AAACAGCACCGCCAATGCGCAAATGCTCATGGATCCTACGGCCATGATGG
CGGCGGCGATGCAACAAATGCAACAGATGCACTATGCAGCGGCAGCAGCA
GCCGGAATGACCACAGAAACCGGAGCTGGACTAGAAGCAACTCTTAATGC
GGATGGCGTTACACCAGCTGGCCTCAAGGAGGTGATCAAGACCAAGAACT
GCATCCTGTTTCCACCTAATCCGAACGCACCTCCTCCCACAATAAGGGAG
CGACCACCAGGATGCCGGACGGTGTTTGTGGGTGGACTGCCGGAAAACAT
AACCGAAGAAGTGATCCGGGAGATCTTCGAATCATGCGGCGAGATCACCA
CATTGCGCATGTCCAAGAAGAACTTTTGCCATATTCGCTACCGCCAAGAG
GGTGCCATAGATAGGGCCATCTACCTATCCGGCTATAGATTGCGTATATC
AGCGCTAAATGAACCTCCCAACTTTGGACGCCTGCATGTGGACTACGCAC
AGGCACGGGATGATCAGTATGATTACGAGTGTCGACAGAGACAGCATCAG
AGGGAACAGCGTCATCGTGAGCGCATGTCGATGGACAGGATGCGATCGCA
GTCGCCGCCACCAATACCGCACTACACGGATCACGAGGCTACTACTGTTG
CGGAGCACCTACGCACCAACGAGACTTTTGTAAAGGCCATTCAAACGATT
ACCGCGTGGCTGGAGCGGGGAGATTGCACTAAGCGGAACGCCAATGTCTT
CTATTCGATGATCCAGAGCACTCATGCCCATGTACGAAGACTCCATGCAG
ACAAACTGCAACTGGAGGAGGATCTAAAGAAGGCCAGAGACAGCTATCGC
AACCAAATGGGCACCATGTCCACGCAATGAAAGCTTTCTAGACCAT
BS28375.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:19:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10948-RB | 1314 | CG10948-PB | 1..1314 | 17..1330 | 6570 | 100 | Plus |
| CG10948-RC | 2415 | CG10948-PC | 1..1312 | 17..1328 | 6560 | 100 | Plus |
| CG10948-RD | 2394 | CG10948-PD | 1..1291 | 38..1328 | 6455 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:19:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10948-RB | 2797 | CG10948-RB | 83..1397 | 17..1331 | 6575 | 100 | Plus |
| CG10948-RC | 2904 | CG10948-RC | 83..1394 | 17..1328 | 6560 | 100 | Plus |
| CG10948-RD | 2870 | CG10948-RD | 53..1360 | 21..1328 | 6540 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:19:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12848365..12849096 | 1333..602 | 3645 | 99.9 | Minus |
| 3L | 28110227 | 3L | 12849158..12849739 | 602..21 | 2910 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 12:19:30 has no hits.
BS28375.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-25 15:17:51 Download gff for
BS28375.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10948-RB | 80..1392 | 17..1329 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:41:28 Download gff for
BS28375.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10948-RB | 83..1395 | 17..1329 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:01:54 Download gff for
BS28375.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10948-RB | 83..1395 | 17..1329 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 13:01:54 Download gff for
BS28375.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12848369..12849095 | 603..1329 | 100 | <- | Minus |
| 3L | 12849158..12849741 | 17..602 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:41:28 Download gff for
BS28375.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12841469..12842195 | 603..1329 | 100 | <- | Minus |
| arm_3L | 12842258..12842841 | 17..602 | 99 | | Minus |
BS28375.pep Sequence
Translation from 16 to 1329
> BS28375.pep
MLPLFGTMPNGVSLPNHPNFLNQLAAAISTAASSTSVVGNPSSPPKQIQN
KMAKQQQQPQGSAPMDLENENEHSADVSSSTMHKEPKLQATSNSLTLPDS
TQLYLNGLVHTPPGYLYFPATQAGGATAPGNPSSAAGGSTPAASANSTAN
AQMLMDPTAMMAAAMQQMQQMHYAAAAAAGMTTETGAGLEATLNADGVTP
AGLKEVIKTKNCILFPPNPNAPPPTIRERPPGCRTVFVGGLPENITEEVI
REIFESCGEITTLRMSKKNFCHIRYRQEGAIDRAIYLSGYRLRISALNEP
PNFGRLHVDYAQARDDQYDYECRQRQHQREQRHRERMSMDRMRSQSPPPI
PHYTDHEATTVAEHLRTNETFVKAIQTITAWLERGDCTKRNANVFYSMIQ
STHAHVRRLHADKLQLEEDLKKARDSYRNQMGTMSTQ*
BS28375.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:23:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10948-PC | 804 | CG10948-PC | 1..437 | 1..437 | 2289 | 100 | Plus |
| CG10948-PB | 437 | CG10948-PB | 1..437 | 1..437 | 2289 | 100 | Plus |
| CG10948-PD | 797 | CG10948-PD | 1..430 | 8..437 | 2252 | 100 | Plus |
