BS28379.complete Sequence
629 bp assembled on 2012-03-08
GenBank Submission: KX802114
> BS28379.complete
GAAGTTATCAGTCGACATGCAGACGCAGTGTATCCTCCTTCTCTTGGCCG
CCAGTCTGGCCATATGTGTGGCGCGTCCGGAACCACCTAGATCGCGTTAC
GGACCGCCGCCACCGCCGGCTCCCCAAAAGGAATACGGTCCTCCGGCCCC
GGCAGCACAGCCTCTACCCGTTTACGGACCACCAGCCGCCTTCTACGGAC
CACCAGCCGCCTCGGAGGCGCTCGTGACCAAGAACGTGTACGTGCATGTG
CCGCCAGAGGAGCCAGAGTTCTATCCGGCCTCGTCGCCCATCCAGACGGC
CGTTCCCAAGAAGCACTACAAGATCATCTTCATCAAGGCGCCCAACCCTC
CGACCCCTGTGCGCCAGGTGCTCCCTCCTCCGGTCCAGGATGAGCACAAG
ACCCTTGTGTATGTTCTGGTCAAGAAGCCCGAGGAGCAGCAGCCCGTCAT
CCTGCCCGCTCCAGAGCCCACAGAGCCCAGCAAGCCAGAGGTCTACTTCA
TCAAGTATAAGCAGCAGCAGGCCAAGCCGGCCACCCAGTACGGCCCACCA
CCGTCCGCCCCATCCGAGGAGTACGGAGCACCACCTGCCCCCCGCACCGT
CGAGCAGTTCTAGAAGCTTTCTAGACCAT
BS28379.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:17:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TwdlBeta-RA | 597 | CG8986-PA | 1..597 | 17..613 | 2985 | 100 | Plus |
| TwdlE-RA | 594 | CG14534-PA | 355..459 | 398..502 | 180 | 78.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:17:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TwdlBeta-RA | 716 | CG8986-RA | 37..634 | 16..613 | 2990 | 100 | Plus |
| lectin-28C-RC | 3044 | CG7106-RC | 1629..1733 | 502..398 | 180 | 78.1 | Minus |
| TwdlE-RA | 1346 | CG14534-RA | 494..598 | 398..502 | 180 | 78.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:17:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11862619..11863216 | 613..16 | 2990 | 100 | Minus |
| 2L | 23513712 | 2L | 7858705..7858809 | 502..398 | 180 | 78.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 08:17:36 has no hits.
BS28379.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-08 17:47:51 Download gff for
BS28379.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TwdlBeta-RA | 34..630 | 17..613 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:35:11 Download gff for
BS28379.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TwdlBeta-RA | 38..634 | 17..613 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:14:51 Download gff for
BS28379.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TwdlBeta-RA | 38..634 | 17..613 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:14:51 Download gff for
BS28379.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11862619..11863215 | 17..613 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:35:11 Download gff for
BS28379.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7750124..7750720 | 17..613 | 100 | | Minus |
BS28379.pep Sequence
Translation from 16 to 612
> BS28379.pep
MQTQCILLLLAASLAICVARPEPPRSRYGPPPPPAPQKEYGPPAPAAQPL
PVYGPPAAFYGPPAASEALVTKNVYVHVPPEEPEFYPASSPIQTAVPKKH
YKIIFIKAPNPPTPVRQVLPPPVQDEHKTLVYVLVKKPEEQQPVILPAPE
PTEPSKPEVYFIKYKQQQAKPATQYGPPPSAPSEEYGAPPAPRTVEQF*
BS28379.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:52:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TwdlBeta-PA | 198 | CG8986-PA | 1..198 | 1..198 | 1072 | 100 | Plus |
| TwdlE-PA | 197 | CG14534-PA | 1..195 | 1..189 | 501 | 50.5 | Plus |
| TwdlC-PA | 360 | CG14254-PA | 68..239 | 23..180 | 336 | 44.9 | Plus |
| TwdlT-PA | 286 | CG5812-PA | 122..229 | 61..168 | 311 | 55.6 | Plus |
| TwdlG-PC | 278 | CG14643-PC | 92..213 | 53..168 | 223 | 41.8 | Plus |
