Clone BS28382 Report

Search the DGRC for BS28382

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:283
Well:82
Vector:pDNR-Dual
Associated Gene/Transcriptcid-RA
Protein status:BS28382.pep: full length peptide match
Sequenced Size:710

Clone Sequence Records

BS28382.complete Sequence

710 bp assembled on 2012-03-08

GenBank Submission: KX801561

> BS28382.complete
GAAGTTATCAGTCGACATGCCACGACACAGCAGAGCCAAGCGCGCACCCA
GGCCGTCGGCGAACAACTCAAAGTCGCCGAACGACGACGACACGGCCTTC
CGCTCGCCGGAGCCAGAAGACGGCACCGACTACGGCCTCGAATTCACCAC
CAGCCAACTGACGCTTCAGGACAACAATCGGCGTTCCTCGACGTTGCGCA
GGGACGCCGGACGGAGGCAGCCGGCAGCGAGAGACAGCTCCACCAGTGGC
GAGGAGGAGGACCAGGAGAATCGCTATCCCACAACCAGATCGCCGCAGAC
GCGTCGAATGACCGTGCAGCAGGAAAGCAAAACGCGAGCAGCAGGGCCAG
TTGCTGCGCAAAACCAGACCAGGCGGCGCAAAGCGGCCAATCCCATGAGC
AGAGCCAAGAGAATGGATCGTGAGATCCGGCGACTGCAGCACCATCCCGG
CACACTGATACCCAAGCTGCCGTTCTCGCGTCTAGTGCGCGAGTTCATCG
TGAAGTACAGCGACGACGAGCCGCTAAGGGTCACCGAAGGCGCCCTATTG
GCCATGCAGGAGTCGTGCGAGATGTACTTGACGCAGCGGCTCGCCGACTC
CTACATGCTAACCAAGCATCGCAATCGCGTCACACTGGAGGTGCGCGACA
TGGCATTGATGGCCTACATCTGCGACCGGGGTCGGCAATTTTAGAAGCTT
TCTAGACCAT

BS28382.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:12:36
Subject Length Description Subject Range Query Range Score Percent Strand
cid-RA 678 CG13329-PA 1..678 17..694 3390 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:12:37
Subject Length Description Subject Range Query Range Score Percent Strand
cid-RA 1015 CG13329-RA 75..752 17..694 3390 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:12:34
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13485691..13486368 17..694 3390 100 Plus
Blast to na_te.dros performed on 2014-11-28 08:12:35 has no hits.

BS28382.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-08 17:47:47 Download gff for BS28382.complete
Subject Subject Range Query Range Percent Splice Strand
cid-RA 91..768 17..694 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:34:50 Download gff for BS28382.complete
Subject Subject Range Query Range Percent Splice Strand
cid-RA 75..752 17..694 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:13:17 Download gff for BS28382.complete
Subject Subject Range Query Range Percent Splice Strand
cid-RA 75..752 17..694 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:13:17 Download gff for BS28382.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13485691..13486368 17..694 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:34:50 Download gff for BS28382.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9373196..9373873 17..694 100   Plus

BS28382.pep Sequence

Translation from 16 to 693

> BS28382.pep
MPRHSRAKRAPRPSANNSKSPNDDDTAFRSPEPEDGTDYGLEFTTSQLTL
QDNNRRSSTLRRDAGRRQPAARDSSTSGEEEDQENRYPTTRSPQTRRMTV
QQESKTRAAGPVAAQNQTRRRKAANPMSRAKRMDREIRRLQHHPGTLIPK
LPFSRLVREFIVKYSDDEPLRVTEGALLAMQESCEMYLTQRLADSYMLTK
HRNRVTLEVRDMALMAYICDRGRQF*

BS28382.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:51:52
Subject Length Description Subject Range Query Range Score Percent Strand
cid-PA 225 CG13329-PA 1..225 1..225 1160 100 Plus