BS28384.complete Sequence
689 bp assembled on 2012-04-18
GenBank Submission: KX801579
> BS28384.complete
GAAGTTATCAGTCGACATGTCAAAGCTCCGAATATGTTTCAAACCCGTCA
AATCGGGTCGCGTTTTCGAAGTGTCTTTAGCAGACTTGCAAAAGGATATT
GATCCAGAACGTTCTTTTCGCAAGTTCCGTCTTATTGCAGAAGATGTTCA
AGACCGTAATGTGCTCTGTAACTTTCACGGAATGGACTTGACTACGGACA
AGTACAGGTCGATGGTTAAAAAGTGGCAAACACTAATTGAAGCTATTGTC
GAAGCAAAGACTGTAGATGGGTACCTCTTGCGAGTGTTTTGTATCGGATT
TACTGCCAAGGATCAGCAGTCTCAGCGCAAAACATGTTATGCTCAGCAAT
CGCAAGTCCGAAAGATTCGTGCTCGCATGACCGACATTATTACTAATGAA
GTTAGTGGTGCCGATCTAAAGCAGCTTGTTAACAAGCTGGCCTTGGACTC
GATTGCGAAAGATATCGAAAAAAGCTGTCAGCGCATATATCCATTACATG
ATGTTTACATTCGTAAAGTAAAGGTATTGAAGAAACCGCGCTTCGATGTC
TCAAAGCTTCTGGAATTGCATGGCGATGGCGGTGGCAAATCCGTGGAAGC
CGTTGTTTCATCCGAGGGAGCCGTAATCGACCGCCCTGAAGGTTATGAGC
CCCCAGTACAGGAAGCTGTTTAAAAGCTTTCTAGACCAT
BS28384.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:58:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS3A-RB | 657 | CG2168-PB | 1..657 | 17..673 | 3285 | 100 | Plus |
RpS3A-RF | 807 | CG2168-PF | 189..807 | 55..673 | 3095 | 100 | Plus |
RpS3A-RA | 807 | CG2168-PA | 189..807 | 55..673 | 3095 | 100 | Plus |
RpS3A-RF | 807 | CG2168-PF | 95..134 | 17..56 | 200 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:58:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS3A-RB | 854 | CG2168-RB | 122..779 | 17..674 | 3290 | 100 | Plus |
RpS3A-RF | 1349 | CG2168-RF | 216..835 | 55..674 | 3100 | 100 | Plus |
RpS3A-RA | 910 | CG2168-RA | 216..835 | 55..674 | 3100 | 100 | Plus |
RpS3A-RF | 1349 | CG2168-RF | 122..161 | 17..56 | 200 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:58:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
4 | 1348131 | 4 | 66272..66740 | 674..206 | 2345 | 100 | Minus |
4 | 1348131 | 4 | 66838..66992 | 209..55 | 775 | 100 | Minus |
4 | 1348131 | 4 | 67047..67086 | 56..17 | 200 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 04:58:35 has no hits.
BS28384.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-18 10:59:11 Download gff for
BS28384.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS3A-RB | 152..806 | 17..671 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:21:12 Download gff for
BS28384.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS3A-RB | 122..776 | 17..671 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:41:06 Download gff for
BS28384.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS3A-RB | 122..776 | 17..671 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:41:06 Download gff for
BS28384.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
4 | 66275..66738 | 208..671 | 100 | <- | Minus |
4 | 66840..66991 | 56..207 | 100 | <- | Minus |
4 | 67048..67086 | 17..55 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:21:12 Download gff for
BS28384.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_4 | 86901..87364 | 208..671 | 100 | <- | Minus |
arm_4 | 87466..87617 | 56..207 | 100 | <- | Minus |
arm_4 | 87674..87712 | 17..55 | 100 | | Minus |
BS28384.pep Sequence
Translation from 16 to 672
> BS28384.pep
MSKLRICFKPVKSGRVFEVSLADLQKDIDPERSFRKFRLIAEDVQDRNVL
CNFHGMDLTTDKYRSMVKKWQTLIEAIVEAKTVDGYLLRVFCIGFTAKDQ
QSQRKTCYAQQSQVRKIRARMTDIITNEVSGADLKQLVNKLALDSIAKDI
EKSCQRIYPLHDVYIRKVKVLKKPRFDVSKLLELHGDGGGKSVEAVVSSE
GAVIDRPEGYEPPVQEAV*
BS28384.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:22:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS3A-PB | 218 | CG2168-PB | 1..218 | 1..218 | 1110 | 100 | Plus |
RpS3A-PF | 268 | CG2168-PF | 64..268 | 14..218 | 1043 | 100 | Plus |
RpS3A-PA | 268 | CG2168-PA | 64..268 | 14..218 | 1043 | 100 | Plus |