Clone BS28384 Report

Search the DGRC for BS28384

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:283
Well:84
Vector:pDNR-Dual
Associated Gene/TranscriptRpS3A-RB
Protein status:BS28384.pep: gold
Sequenced Size:689

Clone Sequence Records

BS28384.complete Sequence

689 bp assembled on 2012-04-18

GenBank Submission: KX801579

> BS28384.complete
GAAGTTATCAGTCGACATGTCAAAGCTCCGAATATGTTTCAAACCCGTCA
AATCGGGTCGCGTTTTCGAAGTGTCTTTAGCAGACTTGCAAAAGGATATT
GATCCAGAACGTTCTTTTCGCAAGTTCCGTCTTATTGCAGAAGATGTTCA
AGACCGTAATGTGCTCTGTAACTTTCACGGAATGGACTTGACTACGGACA
AGTACAGGTCGATGGTTAAAAAGTGGCAAACACTAATTGAAGCTATTGTC
GAAGCAAAGACTGTAGATGGGTACCTCTTGCGAGTGTTTTGTATCGGATT
TACTGCCAAGGATCAGCAGTCTCAGCGCAAAACATGTTATGCTCAGCAAT
CGCAAGTCCGAAAGATTCGTGCTCGCATGACCGACATTATTACTAATGAA
GTTAGTGGTGCCGATCTAAAGCAGCTTGTTAACAAGCTGGCCTTGGACTC
GATTGCGAAAGATATCGAAAAAAGCTGTCAGCGCATATATCCATTACATG
ATGTTTACATTCGTAAAGTAAAGGTATTGAAGAAACCGCGCTTCGATGTC
TCAAAGCTTCTGGAATTGCATGGCGATGGCGGTGGCAAATCCGTGGAAGC
CGTTGTTTCATCCGAGGGAGCCGTAATCGACCGCCCTGAAGGTTATGAGC
CCCCAGTACAGGAAGCTGTTTAAAAGCTTTCTAGACCAT

BS28384.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:58:36
Subject Length Description Subject Range Query Range Score Percent Strand
RpS3A-RB 657 CG2168-PB 1..657 17..673 3285 100 Plus
RpS3A-RF 807 CG2168-PF 189..807 55..673 3095 100 Plus
RpS3A-RA 807 CG2168-PA 189..807 55..673 3095 100 Plus
RpS3A-RF 807 CG2168-PF 95..134 17..56 200 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:58:38
Subject Length Description Subject Range Query Range Score Percent Strand
RpS3A-RB 854 CG2168-RB 122..779 17..674 3290 100 Plus
RpS3A-RF 1349 CG2168-RF 216..835 55..674 3100 100 Plus
RpS3A-RA 910 CG2168-RA 216..835 55..674 3100 100 Plus
RpS3A-RF 1349 CG2168-RF 122..161 17..56 200 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:58:34
Subject Length Description Subject Range Query Range Score Percent Strand
4 1348131 4 66272..66740 674..206 2345 100 Minus
4 1348131 4 66838..66992 209..55 775 100 Minus
4 1348131 4 67047..67086 56..17 200 100 Minus
Blast to na_te.dros performed on 2014-11-28 04:58:35 has no hits.

BS28384.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-18 10:59:11 Download gff for BS28384.complete
Subject Subject Range Query Range Percent Splice Strand
RpS3A-RB 152..806 17..671 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:21:12 Download gff for BS28384.complete
Subject Subject Range Query Range Percent Splice Strand
RpS3A-RB 122..776 17..671 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:41:06 Download gff for BS28384.complete
Subject Subject Range Query Range Percent Splice Strand
RpS3A-RB 122..776 17..671 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:41:06 Download gff for BS28384.complete
Subject Subject Range Query Range Percent Splice Strand
4 66275..66738 208..671 100 <- Minus
4 66840..66991 56..207 100 <- Minus
4 67048..67086 17..55 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:21:12 Download gff for BS28384.complete
Subject Subject Range Query Range Percent Splice Strand
arm_4 86901..87364 208..671 100 <- Minus
arm_4 87466..87617 56..207 100 <- Minus
arm_4 87674..87712 17..55 100   Minus

BS28384.pep Sequence

Translation from 16 to 672

> BS28384.pep
MSKLRICFKPVKSGRVFEVSLADLQKDIDPERSFRKFRLIAEDVQDRNVL
CNFHGMDLTTDKYRSMVKKWQTLIEAIVEAKTVDGYLLRVFCIGFTAKDQ
QSQRKTCYAQQSQVRKIRARMTDIITNEVSGADLKQLVNKLALDSIAKDI
EKSCQRIYPLHDVYIRKVKVLKKPRFDVSKLLELHGDGGGKSVEAVVSSE
GAVIDRPEGYEPPVQEAV*

BS28384.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:22:55
Subject Length Description Subject Range Query Range Score Percent Strand
RpS3A-PB 218 CG2168-PB 1..218 1..218 1110 100 Plus
RpS3A-PF 268 CG2168-PF 64..268 14..218 1043 100 Plus
RpS3A-PA 268 CG2168-PA 64..268 14..218 1043 100 Plus