Clone BS28387 Report

Search the DGRC for BS28387

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:283
Well:87
Vector:pDNR-Dual
Associated Gene/TranscriptCG6216-RB
Protein status:BS28387.pep: full length peptide match
Sequenced Size:740

Clone Sequence Records

BS28387.complete Sequence

740 bp assembled on 2012-03-08

GenBank Submission: KX802894

> BS28387.complete
GAAGTTATCAGTCGACATGAGCAAACTAGACGATCTGCTGTCCAAAAAGA
AGACGGTGGTGCCCGTCTTGGATCTCAGCCGCAGCAATATTCAGACCGTC
GAGGAGTTCAAACGGCTGCTGGAGAAGGTGCCCGACTACAAGATGCGACC
GGTGAAGGTGCGCGCCGAGGAGATAAAGATCCGGGAGAAGGACTACGCCT
TCAAGATGCCCAAAAAGGAGATGCGAAAGCTGCTGCGAGCCAACGGGGAA
CGAGAGGCGATGTACACCTATGCGGATCCGGTGCCCGGTGAAATGAAGGA
TGTGGTGCTGATGGAACTGTGTGCGGTGCCCATCGATTGGAAGATGCTGA
CCACGCTGAGGCCCAAGAACAAACAGGAGGAGGAATACTTCAGCCGCATG
GTTGAGATGGGAAAGTTGGAGCTTAAAACCGAGGCTCGCGATCGCCGAGA
GTTTGCCCTAAACAATTGTGTCAAGAAAATCAAGAATAAATCGGGAATTG
TGGAAACTCGACTGATGACCTGTGAGTCCTGCGGCGAGGAAATGTGTTGT
GGCAAGACTTGCGGCGACTTCAATTACGATCTGTACATTCGGGTTGAGGC
CAGGGTGATTAAGCCGAAACCGGCACCTTTGTCCTCCAACAAGGCCAAAT
TAAATGGACGCAAAAAGTCATCGGTGGGCGGAACCAAGATCAAGGTCAAA
AAGGCATCAAGCAAAGCCAGCTAAAAGCTTTCTAGACCAT

BS28387.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:21:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG6216-RB 708 CG6216-PB 1..708 17..724 3540 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:21:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG6216-RB 1073 CG6216-RB 37..745 17..725 3545 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:21:26
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11150135..11150670 552..17 2680 100 Minus
3L 28110227 3L 11149906..11150080 725..551 875 100 Minus
Blast to na_te.dros performed on 2014-11-28 08:21:27 has no hits.

BS28387.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-08 17:47:53 Download gff for BS28387.complete
Subject Subject Range Query Range Percent Splice Strand
CG6216-RB 37..742 17..722 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:35:21 Download gff for BS28387.complete
Subject Subject Range Query Range Percent Splice Strand
CG6216-RB 37..742 17..722 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:16:14 Download gff for BS28387.complete
Subject Subject Range Query Range Percent Splice Strand
CG6216-RB 37..742 17..722 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:16:14 Download gff for BS28387.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11149909..11150079 552..722 100 <- Minus
3L 11150136..11150670 17..551 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:35:21 Download gff for BS28387.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11143009..11143179 552..722 100 <- Minus
arm_3L 11143236..11143770 17..551 100   Minus

BS28387.pep Sequence

Translation from 16 to 723

> BS28387.pep
MSKLDDLLSKKKTVVPVLDLSRSNIQTVEEFKRLLEKVPDYKMRPVKVRA
EEIKIREKDYAFKMPKKEMRKLLRANGEREAMYTYADPVPGEMKDVVLME
LCAVPIDWKMLTTLRPKNKQEEEYFSRMVEMGKLELKTEARDRREFALNN
CVKKIKNKSGIVETRLMTCESCGEEMCCGKTCGDFNYDLYIRVEARVIKP
KPAPLSSNKAKLNGRKKSSVGGTKIKVKKASSKAS*

BS28387.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:52:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG6216-PB 235 CG6216-PB 1..235 1..235 1206 100 Plus