BS28389.complete Sequence
680 bp assembled on 2012-03-08
GenBank Submission: KX802419
> BS28389.complete
GAAGTTATCAGTCGACATGGAGGAGACATATCTGTACGATCCTAATCTGC
TGCTAAAGCTGGACTTTCATCGCAGTCCCGCCAACTTTAAGCCCTTCATA
TCGGCGGCCAATCCCGGCGAGCCCTGGATGAAAGTGCGTCCTCTCAAGGA
CACCGACTACGATCGTGGATTCCTGCAGCTGCTCTCGCAACTCACCCATG
TCGGCAATGTGAATCGTACGCAGTTCTTGACCCGCTTTTCGCAGATGAAA
GCCAGTGGGGACTACTTTGTCACCGTCATTGAGGACACTCGCAAGAATGA
GATTATTGGAGCTGCATCCTTGGTGATCGAGCGCAAGTTCATCCATAACT
GTGCTGTGCGTGGCCGTCTAGAGGATGTGGTGGTCAATGACACGTATCGC
GGGAAGCAACTGGGAAAACTGATCGTGGTCACCGTATCGCTGCTGGCCGA
GGAACTGGGCTGCTACAAAATGTCGCTGGACTGCAAGGACAAGCTGATCA
AGTTCTATGAGTCGCTGGGCTATGTGGCCATTCCCGGAAACTCCAACTCC
ATGACGATTCGCTACGATGAGGGGCCAACGCTCAAGCGGAATGCTACCTC
AGCCGGCTCCAGTGGAACAGTGGGCGACTCCTGCCAAACTGTGAGCCTCG
ATTTTGCCTCTTGAAAGCTTTCTAGACCAT
BS28389.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:22:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1969-RF | 687 | CG1969-PF | 1..648 | 17..664 | 3240 | 100 | Plus |
| CG1969-RH | 648 | CG1969-PH | 1..648 | 17..664 | 3240 | 100 | Plus |
| CG1969-RG | 648 | CG1969-PG | 1..648 | 17..664 | 3240 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:22:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1969-RF | 1341 | CG1969-RF | 134..782 | 16..664 | 3245 | 100 | Plus |
| CG1969-RG | 1495 | CG1969-RG | 288..936 | 16..664 | 3245 | 100 | Plus |
| CG1969-RB | 1341 | CG1969-RB | 134..782 | 16..664 | 3245 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:22:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29741150..29741393 | 421..664 | 1220 | 100 | Plus |
| 3R | 32079331 | 3R | 29740567..29740778 | 19..230 | 1060 | 100 | Plus |
| 3R | 32079331 | 3R | 29740840..29740967 | 231..358 | 640 | 100 | Plus |
| 3R | 32079331 | 3R | 29741028..29741091 | 358..421 | 320 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 08:22:43 has no hits.
BS28389.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-08 17:47:55 Download gff for
BS28389.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1969-RB | 133..779 | 17..663 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:35:24 Download gff for
BS28389.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1969-RB | 135..781 | 17..663 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:16:45 Download gff for
BS28389.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1969-RB | 135..781 | 17..663 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:16:45 Download gff for
BS28389.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29741029..29741090 | 359..420 | 100 | -> | Plus |
| 3R | 29741150..29741392 | 421..663 | 100 | | Plus |
| 3R | 29740840..29740967 | 231..358 | 100 | -> | Plus |
| 3R | 29740566..29740778 | 17..230 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:35:24 Download gff for
BS28389.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25566288..25566500 | 17..230 | 99 | -> | Plus |
| arm_3R | 25566562..25566689 | 231..358 | 100 | -> | Plus |
| arm_3R | 25566751..25566812 | 359..420 | 100 | -> | Plus |
| arm_3R | 25566872..25567114 | 421..663 | 100 | | Plus |
BS28389.pep Sequence
Translation from 16 to 663
> BS28389.pep
MEETYLYDPNLLLKLDFHRSPANFKPFISAANPGEPWMKVRPLKDTDYDR
GFLQLLSQLTHVGNVNRTQFLTRFSQMKASGDYFVTVIEDTRKNEIIGAA
SLVIERKFIHNCAVRGRLEDVVVNDTYRGKQLGKLIVVTVSLLAEELGCY
KMSLDCKDKLIKFYESLGYVAIPGNSNSMTIRYDEGPTLKRNATSAGSSG
TVGDSCQTVSLDFAS*
BS28389.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:52:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1969-PH | 215 | CG1969-PH | 1..215 | 1..215 | 1112 | 100 | Plus |
| CG1969-PG | 215 | CG1969-PG | 1..215 | 1..215 | 1112 | 100 | Plus |
| CG1969-PB | 215 | CG1969-PB | 1..215 | 1..215 | 1112 | 100 | Plus |
| CG1969-PF | 228 | CG1969-PF | 1..215 | 1..215 | 1112 | 100 | Plus |
| CG1969-PA | 219 | CG1969-PA | 6..219 | 2..215 | 1107 | 100 | Plus |
