BS28390.complete Sequence
503 bp assembled on 2012-03-08
GenBank Submission: KX801367
> BS28390.complete
GAAGTTATCAGTCGACATGTTGCGGCAATTTATAGTATCTACGGTAGGCC
GTCGCCTGCAACTACCTATGATGGCCCAAAGTCGCCTCGCCAGCAATTTG
GACAAAACTGAGTACACAACACCCGGGGAAATTGTGGACTACGATGATCC
GCCGCATTTGCCAGTTCCGGAATATCCTGTCCGTCCCGATGAGCCGCTGG
AAACTCGCAAGCAGCGCCTTTTGTATCAAAGCAGGAAACGCGGAATGCTG
GAAAACGATCTCTTGCTGAGCACTTTTGTGGCCAAGCATTTGAAGGACTT
CAATGCCGAGCAGACCGCCGAGTACGATCAGTTGATCAATGGTGTCAGCA
ACGACTGGGATATATTCTACTGGGCCACCGATACCAAGCCAACACCTCCT
CAATTCGATACCGAAATAATGCGTCTGCTAAAGGAGCACGTCAAAAATCA
TGAAAAAGTGCAAAGGATAAGGCAGCCGGATTTGTGAAAGCTTTCTAGAC
CAT
BS28390.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:23:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12895-RB | 471 | CG12895-PB | 1..471 | 17..487 | 2355 | 100 | Plus |
| CG12895-RA | 471 | CG12895-PA | 1..471 | 17..487 | 2355 | 100 | Plus |
| CG14757-RA | 492 | CG14757-PA | 130..380 | 131..381 | 565 | 81.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:23:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12895-RB | 667 | CG12895-RB | 46..517 | 17..488 | 2360 | 100 | Plus |
| CG12895-RA | 593 | CG12895-RA | 46..517 | 17..488 | 2360 | 100 | Plus |
| CG14757-RA | 739 | CG14757-RA | 246..496 | 131..381 | 565 | 81.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:23:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10436748..10437020 | 488..216 | 1365 | 100 | Minus |
| 2R | 25286936 | 2R | 10437082..10437263 | 216..35 | 910 | 100 | Minus |
| 2R | 25286936 | 2R | 8172607..8172749 | 381..239 | 415 | 86 | Minus |
Blast to na_te.dros performed on 2014-11-28 08:23:43 has no hits.
BS28390.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-08 17:47:56 Download gff for
BS28390.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12895-RA | 28..492 | 22..486 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:35:28 Download gff for
BS28390.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12895-RA | 51..515 | 22..486 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:17:07 Download gff for
BS28390.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12895-RA | 51..515 | 22..486 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:17:07 Download gff for
BS28390.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10437082..10437263 | 35..216 | 100 | <- | Minus |
| 2R | 10436750..10437019 | 217..486 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:35:28 Download gff for
BS28390.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6324255..6324524 | 217..486 | 100 | <- | Minus |
| arm_2R | 6324587..6324768 | 35..216 | 100 | <- | Minus |
BS28390.pep Sequence
Translation from 16 to 486
> BS28390.pep
MLRQFIVSTVGRRLQLPMMAQSRLASNLDKTEYTTPGEIVDYDDPPHLPV
PEYPVRPDEPLETRKQRLLYQSRKRGMLENDLLLSTFVAKHLKDFNAEQT
AEYDQLINGVSNDWDIFYWATDTKPTPPQFDTEIMRLLKEHVKNHEKVQR
IRQPDL*
BS28390.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:52:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12895-PB | 156 | CG12895-PB | 1..156 | 1..156 | 825 | 100 | Plus |
| CG12895-PA | 156 | CG12895-PA | 1..156 | 1..156 | 825 | 100 | Plus |
| CG14757-PA | 163 | CG14757-PA | 44..161 | 39..156 | 536 | 82.2 | Plus |
