Clone BS28391 Report

Search the DGRC for BS28391

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:283
Well:91
Vector:pDNR-Dual
Associated Gene/TranscriptCG5172-RC
Protein status:BS28391.pep: full length peptide match
Sequenced Size:373

Clone Sequence Records

BS28391.complete Sequence

373 bp assembled on 2012-03-08

GenBank Submission: KX801712

> BS28391.complete
GAAGTTATCAGTCGACATGCGTCACGCTGTGATCCTTGTTTTCGTGTGTT
GCCTGCTGATCGCCTTAACCTCAGCCGGTTTGCTGGGCGGTGGAGGCGGT
GGTGGTGGCTACGGCGGTGGTGGTGGTGGTGGCTACGGCGGTGGTGGTGG
TGGTCAGAGCGGCTACGGCGGCGGTGGCCAAAAGAACGGAGGAGGCGGCC
ATGGAGGTGGCGGCCAGGGAAGCTACGGAGGCGGTAGCCAAGGTGGACAT
GGAGGCGGTGGCCAAGGAGGTTGGCAGAAGAACGGAGGAGGTGCAGCTAA
TCCACCGTCTGATGCTGACTTGTGTTCCATGGCATAGAAGCTTTCTAGAC
CATTCGTTTGGCGCGTAAGCGGG

BS28391.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:24:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG5172-RC 321 CG5172-PC 1..321 17..337 1605 100 Plus
CG5172-RD 519 CG5172-PD 1..277 17..293 1385 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:24:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG5172-RC 531 CG5172-RC 106..427 17..338 1610 100 Plus
CG5172-RD 788 CG5172-RD 106..382 17..293 1385 100 Plus
CG5172-RD 788 CG5172-RD 635..684 289..338 235 98 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:24:02
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17221547..17221773 17..243 1135 100 Plus
X 23542271 X 17222124..17222176 241..293 265 100 Plus
X 23542271 X 17222498..17222547 289..338 235 98 Plus
Blast to na_te.dros performed on 2014-11-28 08:24:03 has no hits.

BS28391.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-08 17:47:56 Download gff for BS28391.complete
Subject Subject Range Query Range Percent Splice Strand
CG5172-RC 106..427 17..338 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:35:33 Download gff for BS28391.complete
Subject Subject Range Query Range Percent Splice Strand
CG5172-RC 106..427 17..338 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:17:13 Download gff for BS28391.complete
Subject Subject Range Query Range Percent Splice Strand
CG5172-RC 106..427 17..338 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:17:13 Download gff for BS28391.complete
Subject Subject Range Query Range Percent Splice Strand
X 17222503..17222547 294..338 100   Plus
X 17221547..17221772 17..242 100 -> Plus
X 17222126..17222176 243..293 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:35:33 Download gff for BS28391.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 17115580..17115805 17..242 100 -> Plus
arm_X 17116159..17116209 243..293 100 -> Plus
arm_X 17116536..17116580 294..338 100   Plus

BS28391.pep Sequence

Translation from 16 to 336

> BS28391.pep
MRHAVILVFVCCLLIALTSAGLLGGGGGGGGYGGGGGGGYGGGGGGQSGY
GGGGQKNGGGGHGGGGQGSYGGGSQGGHGGGGQGGWQKNGGGAANPPSDA
DLCSMA*

BS28391.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:52:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG5172-PC 106 CG5172-PC 1..106 1..106 600 100 Plus
CG5172-PD 172 CG5172-PD 1..92 1..92 526 100 Plus
CG14191-PA 193 CG14191-PA 3..130 8..91 251 45.3 Plus
CG11458-PA 98 CG11458-PA 1..96 1..92 240 54.1 Plus
Fib-PA 344 CG9888-PA 28..97 24..92 235 61.4 Plus
CG14191-PA 193 CG14191-PA 79..176 13..94 213 49.5 Plus
CG14191-PA 193 CG14191-PA 87..189 26..93 196 45.6 Plus
CG5172-PD 172 CG5172-PD 101..171 21..92 166 48.6 Plus
CG14191-PA 193 CG14191-PA 113..193 18..86 151 45.1 Plus
CG11458-PA 98 CG11458-PA 55..97 24..66 139 66.7 Plus
CG11458-PA 98 CG11458-PA 58..97 21..61 137 68.2 Plus