BS28391.complete Sequence
373 bp assembled on 2012-03-08
GenBank Submission: KX801712
> BS28391.complete
GAAGTTATCAGTCGACATGCGTCACGCTGTGATCCTTGTTTTCGTGTGTT
GCCTGCTGATCGCCTTAACCTCAGCCGGTTTGCTGGGCGGTGGAGGCGGT
GGTGGTGGCTACGGCGGTGGTGGTGGTGGTGGCTACGGCGGTGGTGGTGG
TGGTCAGAGCGGCTACGGCGGCGGTGGCCAAAAGAACGGAGGAGGCGGCC
ATGGAGGTGGCGGCCAGGGAAGCTACGGAGGCGGTAGCCAAGGTGGACAT
GGAGGCGGTGGCCAAGGAGGTTGGCAGAAGAACGGAGGAGGTGCAGCTAA
TCCACCGTCTGATGCTGACTTGTGTTCCATGGCATAGAAGCTTTCTAGAC
CATTCGTTTGGCGCGTAAGCGGG
BS28391.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:24:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5172-RC | 321 | CG5172-PC | 1..321 | 17..337 | 1605 | 100 | Plus |
CG5172-RD | 519 | CG5172-PD | 1..277 | 17..293 | 1385 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:24:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5172-RC | 531 | CG5172-RC | 106..427 | 17..338 | 1610 | 100 | Plus |
CG5172-RD | 788 | CG5172-RD | 106..382 | 17..293 | 1385 | 100 | Plus |
CG5172-RD | 788 | CG5172-RD | 635..684 | 289..338 | 235 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:24:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 17221547..17221773 | 17..243 | 1135 | 100 | Plus |
X | 23542271 | X | 17222124..17222176 | 241..293 | 265 | 100 | Plus |
X | 23542271 | X | 17222498..17222547 | 289..338 | 235 | 98 | Plus |
Blast to na_te.dros performed on 2014-11-28 08:24:03 has no hits.
BS28391.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-08 17:47:56 Download gff for
BS28391.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5172-RC | 106..427 | 17..338 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:35:33 Download gff for
BS28391.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5172-RC | 106..427 | 17..338 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:17:13 Download gff for
BS28391.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5172-RC | 106..427 | 17..338 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:17:13 Download gff for
BS28391.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 17222503..17222547 | 294..338 | 100 | | Plus |
X | 17221547..17221772 | 17..242 | 100 | -> | Plus |
X | 17222126..17222176 | 243..293 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:35:33 Download gff for
BS28391.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 17115580..17115805 | 17..242 | 100 | -> | Plus |
arm_X | 17116159..17116209 | 243..293 | 100 | -> | Plus |
arm_X | 17116536..17116580 | 294..338 | 100 | | Plus |
BS28391.pep Sequence
Translation from 16 to 336
> BS28391.pep
MRHAVILVFVCCLLIALTSAGLLGGGGGGGGYGGGGGGGYGGGGGGQSGY
GGGGQKNGGGGHGGGGQGSYGGGSQGGHGGGGQGGWQKNGGGAANPPSDA
DLCSMA*
BS28391.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:52:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5172-PC | 106 | CG5172-PC | 1..106 | 1..106 | 600 | 100 | Plus |
CG5172-PD | 172 | CG5172-PD | 1..92 | 1..92 | 526 | 100 | Plus |
CG14191-PA | 193 | CG14191-PA | 3..130 | 8..91 | 251 | 45.3 | Plus |
CG11458-PA | 98 | CG11458-PA | 1..96 | 1..92 | 240 | 54.1 | Plus |
Fib-PA | 344 | CG9888-PA | 28..97 | 24..92 | 235 | 61.4 | Plus |
CG14191-PA | 193 | CG14191-PA | 79..176 | 13..94 | 213 | 49.5 | Plus |
CG14191-PA | 193 | CG14191-PA | 87..189 | 26..93 | 196 | 45.6 | Plus |
CG5172-PD | 172 | CG5172-PD | 101..171 | 21..92 | 166 | 48.6 | Plus |
CG14191-PA | 193 | CG14191-PA | 113..193 | 18..86 | 151 | 45.1 | Plus |
CG11458-PA | 98 | CG11458-PA | 55..97 | 24..66 | 139 | 66.7 | Plus |
CG11458-PA | 98 | CG11458-PA | 58..97 | 21..61 | 137 | 68.2 | Plus |