Clone BS28393 Report

Search the DGRC for BS28393

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:283
Well:93
Vector:pDNR-Dual
Associated Gene/TranscriptCG14780-RA
Protein status:BS28393.pep: full length peptide match
Sequenced Size:941

Clone Sequence Records

BS28393.complete Sequence

941 bp assembled on 2012-03-08

GenBank Submission: KX801241

> BS28393.complete
GAAGTTATCAGTCGACATGACTCAGTTTGGCCTGCACGGCTGCAGCTACA
TTCTGTTCTGGTTCCTTCTCGCCTGCGCGGCGGCGGACCTTCAGGAGAAT
CAGCAGTCGCGCATCATCAATGGAAGCGTGGCCAAGGCGGACGAGACGCG
CCACCTGGTCTCCATCCGCCTTCTCCGCCACGACAACAACTTTGGAAGCG
GCCACATCTGCGGCGGGGCGCTAATCGCGCCCAGAAAGGTTCTGACCGCA
GCGCACTGCCTGTACAACAATCAGAGAAAGCGCTTTCGGCGGGCCAGCGA
ATTCGTAGTGGTTCTGGGCACGCTGAACCGCTTCGAGCACCGCAATGGCA
CCATCGTGTCCCAGGTGAGTTCCATGGCCTACATGCACACCTTCAGCCCG
GACAGCATGCGCGACGACGTGGGCATCCTTTTTCTGCGCACCGGGCTGCC
GATGTCTCCAGGCGGTGGTGTCCATCTCACAGTGGCCCCCATCCAGCTGG
CGGGCCAGATCACGCCCCCCGGCAAGCTGTGCCAGGTGGCCGGCTGGGGT
CGAACCGAGCAGAGCTCCCTCTCCAACATCCTGCTGACGGCCAACGTGAG
CACCATCCGGCACCAGACCTGCCGCATGATCTACAGGTCCGGCCTGCTGC
CCGGGATGATGTGCGCAGGACGCCTGCAGGGCGGCACCGATTCTTGTCAA
GGCGACTCCGGCGGACCGTTGGTGCACGAGGGCCGTCTGGTGGGTGTGGT
CTCCTGGGGCTACGGATGCGCAGAGCCGGGACTGCCGGGAGTCTACGTGG
ACGTGGAGTACTACCGCCAGTGGATAGAGGGACGCAGCGGGGCTCCCCAT
TCCAGGCTGGCTACCGGACTGTTCCTACTCCTGCTCCTGCCCCTGCTGAT
GCGGTGCTCGGGGTCGTGGCTATAGAAGCTTTCTAGACCAT

BS28393.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:00:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG14780-RA 909 CG14780-PA 1..909 17..925 4545 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:00:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG14780-RA 1082 CG14780-RA 45..953 17..925 4545 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:00:38
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 1473233..1473598 560..925 1830 100 Plus
X 23542271 X 1472876..1473170 268..562 1475 100 Plus
X 23542271 X 1472566..1472816 17..267 1255 100 Plus
Blast to na_te.dros performed on 2014-11-28 05:00:39 has no hits.

BS28393.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-08 17:47:57 Download gff for BS28393.complete
Subject Subject Range Query Range Percent Splice Strand
CG14780-RA 42..950 17..925 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:35:41 Download gff for BS28393.complete
Subject Subject Range Query Range Percent Splice Strand
CG14780-RA 42..950 17..925 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:02:12 Download gff for BS28393.complete
Subject Subject Range Query Range Percent Splice Strand
CG14780-RA 45..953 17..925 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:02:12 Download gff for BS28393.complete
Subject Subject Range Query Range Percent Splice Strand
X 1472566..1472816 17..267 100 -> Plus
X 1472876..1473170 268..562 100 -> Plus
X 1473236..1473598 563..925 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:35:41 Download gff for BS28393.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 1366599..1366849 17..267 100 -> Plus
arm_X 1366909..1367203 268..562 100 -> Plus
arm_X 1367269..1367631 563..925 100   Plus

BS28393.pep Sequence

Translation from 16 to 924

> BS28393.pep
MTQFGLHGCSYILFWFLLACAAADLQENQQSRIINGSVAKADETRHLVSI
RLLRHDNNFGSGHICGGALIAPRKVLTAAHCLYNNQRKRFRRASEFVVVL
GTLNRFEHRNGTIVSQVSSMAYMHTFSPDSMRDDVGILFLRTGLPMSPGG
GVHLTVAPIQLAGQITPPGKLCQVAGWGRTEQSSLSNILLTANVSTIRHQ
TCRMIYRSGLLPGMMCAGRLQGGTDSCQGDSGGPLVHEGRLVGVVSWGYG
CAEPGLPGVYVDVEYYRQWIEGRSGAPHSRLATGLFLLLLLPLLMRCSGS
WL*

BS28393.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:52:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG14780-PA 302 CG14780-PA 1..302 1..302 1604 100 Plus
CG6041-PA 308 CG6041-PA 32..269 30..270 467 38.1 Plus
CG6048-PA 362 CG6048-PA 45..284 32..270 459 43.3 Plus
CG32755-PA 315 CG32755-PA 37..271 32..270 401 37.4 Plus
etaTry-PA 262 CG12386-PA 13..254 16..270 370 34.6 Plus