BS28394.complete Sequence
488 bp assembled on 2012-05-04
GenBank Submission: KX805944
> BS28394.complete
GAAGTTATCAGTCGACATGTCCAAGCGCAACATAACGTACGTAAAGCCGC
AAGAACCTAGTTTTCTGGCCAAGTTGAAGGCTGAAATTGGCTACAAGGAG
GGACCCACCGTAGAGACCAAGCGTCAGCGATTGGATCCGCAGGACCAGGA
GGACTACGATTCTGAGGAAGATTCACGGGAGGACGAACAGCCGCAGGTGG
TCGTCCTTAGGCCGGGAGATCTATCCGCCGAAGAGGCCAAAACGGAGAAA
CTGTTGGCCTCCAAAGAATTAGCCGAAAAGCGAGCGGATCTGACGCAGCC
AATAGTCTTCAAACACTGTGTCAAGCAGCCCAACATCGAGAAAAAAGAGT
CCCAATCTGAAACCAACAAGAAGTCCGAAAAATCCAGCACATCCAAGAGC
AAGAAGTCCAAGGCCGCCAGTAGTAAGCTGTCCTTCAACGAGGACGAGGA
GGACGAGACTGCCGAGGATTGAAAGCTTTCTAGACCAT
BS28394.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:55:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42245-RA | 456 | CG42245-PA | 1..456 | 17..472 | 2280 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:55:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42245-RA | 5111 | CG42245-RA | 98..554 | 17..473 | 2285 | 100 | Plus |
| MEP-1-RC | 5111 | CG1244-RC | 98..554 | 17..473 | 2285 | 100 | Plus |
| MEP-1-RG | 5171 | CG1244-RG | 261..614 | 120..473 | 1770 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:55:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 2633536..2633744 | 265..473 | 1045 | 100 | Plus |
| 3L | 28110227 | 3L | 2631975..2632121 | 120..266 | 735 | 100 | Plus |
| 3L | 28110227 | 3L | 2631812..2631916 | 17..121 | 525 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 12:55:08 has no hits.
BS28394.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-04 14:20:23 Download gff for
BS28394.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42245-RA | 93..547 | 17..471 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:48:09 Download gff for
BS28394.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42245-RA | 98..552 | 17..471 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:16:47 Download gff for
BS28394.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MEP-1-RC | 98..552 | 17..471 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:16:47 Download gff for
BS28394.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 2631812..2631916 | 17..121 | 100 | -> | Plus |
| 3L | 2631977..2632121 | 122..266 | 100 | -> | Plus |
| 3L | 2633538..2633742 | 267..471 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:48:09 Download gff for
BS28394.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 2633538..2633742 | 267..471 | 100 | | Plus |
| arm_3L | 2631812..2631916 | 17..121 | 100 | -> | Plus |
| arm_3L | 2631977..2632121 | 122..266 | 100 | -> | Plus |
BS28394.pep Sequence
Translation from 16 to 471
> BS28394.pep
MSKRNITYVKPQEPSFLAKLKAEIGYKEGPTVETKRQRLDPQDQEDYDSE
EDSREDEQPQVVVLRPGDLSAEEAKTEKLLASKELAEKRADLTQPIVFKH
CVKQPNIEKKESQSETNKKSEKSSTSKSKKSKAASSKLSFNEDEEDETAE
D*
BS28394.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:28:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42245-PA | 151 | CG42245-PA | 1..151 | 1..151 | 757 | 100 | Plus |
