BS28396.complete Sequence
1769 bp assembled on 2012-04-11
GenBank Submission: KX800289
> BS28396.complete
GAAGTTATCAGTCGACATGATCCGGCTTAATTGGCTATTCAGGAGCTCCT
CGGTGCTGCTGCGCAGCCAGGTGCGACTGCTCCATGTGGGAGATGCCAAT
GTTTTGCATAGCGAGGTAGACAAGCAGTCCGCCGAGTACAAGGAAAATGC
CAGAGAGATGGCCAGTTTGGTTGGAGATCTGCGGAACTTCACCAGCCAGG
TGCTCAAGGGAGGCGGACAAAAGGCCATCGAGCGACACACATCGCGGGGT
AAACTCTTAGCCAGGGAGCGCATCAACCTGCTCCTGGATAAAGGATCGCC
CTTCCTAGAACTCAGTGCTTTGGCCGGACACGAGTTATATGGCGAAGAGG
TGGTCAACTCCGGGGGAATCGTCACCGGAGTGGGACGCGTTTGCGGAACT
GAGTGTTTGGTGGTGGCCAACGATGCCACTGTGAAGGGTGGAAGCTACTA
TCCCATTACCGTTAAGAAGCATTTGCGCGCTCAGGAGATTGCCCAAGAAA
ACCGCTTGCCCTGCATTTACCTTGTGGACTCGGGTGGCGCCAACCTTCCG
CGCCAGGCGGATGTCTTTCCAGACAAACTGCACTTCGGACGCATCTTCTA
CAACCAGGCAAACATGTCGGCCCAGGGAATTCCTCAGATTGCTGTAGTTA
TGGGCAGCTGCACGGCCGGAGGAGCTTACGTACCGGCAATGGCCGATGAG
AGCATCATTGTTAAGAAGCAGGGAACTATATTTCTTGCTGGGCCGCCGCT
GGTGAAGGCGGCCACTGGAGAGGAAGTGTCTGCGGAAGATTTGGGTGGAG
CAGACTTGCACTGCAAGACTTCTGGGGTCACCGACCACTATGCCTTAGAC
GACGAACACGCCTTGTATCTGGCCCGCCAGATTGTGAGCAACTTAAACTT
GTCCGCCACTAATTCGTACAACGATCAGCTGATGCACTCCAGTCAAGTCA
ATTTCCAGACTGCTACTCCGCCGTCTGCCGTAGAAGAACCGCGCTACGAC
GCGGAAGAGCTGTACGGCATCGTAGGTCCCAATCTTACCAAAAGCTTTGA
CGTTCGCGAGGTGATTGCGCGCATCGTCGACGGAAGTCGCTTTACGGAGT
TTAAGAAGCTATATGGTGAGACTTTGGTGTGCGGATTTGCGAAGCTATAT
GGCCACACAGTGGGAATAGTCGGAAACAATGGAGTCCTTTTCTCGGAGAG
CGCACTCAAAGGCGCCCACTTCATTCAGTTGTGCGCACAGCGCAAGATAC
CGCTCGTTTTCCTGCAAAATATTACTGGCTTCATGGTGGGGCGCGATGCC
GAGGCCAATGGTATTGCCAAAAACGGAGCTAAGATGGTAACGGCCGTGGC
CTGCGCTAATGTGCCCAAGTTCACGGTGATAATCGGCGGTTCCTACGGTG
CGGGCAATTACGGCATGTGCGGTCGGGCCTATTCGCCTCGTTTCCTATAC
ATGTGGCCAAATTCGCGCATCTCAGTGATGGGCGGAACTCAGGCAGCCAA
TGTTATGGCTCAGATCACCGAAGATCAACGCAAGCGAGCTGGCAAGGAGT
TCAGCGAGGAAGAAGCCCAAAAGCTGAAGGCTCCCATTGTGGAAATGTTT
GAGGCGGAGGGTTCGCCCTACTACAGTACGGCTCGTCTGTGGGACGACGG
CATCATTGATCCGGCCAACACCCGTCAGATCCTGGGCCTTAGCTTGAAAG
CAGCCTTGAACAACGCCGGTCAGGAGACCAAGTTTGGAGTCTTCCGCATG
TAAAAGCTTTCTAGACCAT
BS28396.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:44:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3267-RA | 1737 | CG3267-PA | 1..1737 | 17..1753 | 8685 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:44:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3267-RA | 2141 | CG3267-RA | 105..1842 | 17..1754 | 8690 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:44:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 6747242..6748124 | 396..1278 | 4415 | 100 | Plus |
| 2R | 25286936 | 2R | 6748178..6748655 | 1277..1754 | 2390 | 100 | Plus |
| 2R | 25286936 | 2R | 6746668..6746923 | 141..396 | 1280 | 100 | Plus |
| 2R | 25286936 | 2R | 6746485..6746611 | 17..143 | 635 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 04:44:19 has no hits.
BS28396.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-11 12:37:41 Download gff for
BS28396.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3267-RA | 101..1835 | 17..1751 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:19:52 Download gff for
BS28396.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3267-RA | 105..1839 | 17..1751 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:35:52 Download gff for
BS28396.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3267-RA | 105..1839 | 17..1751 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:35:52 Download gff for
BS28396.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 6746485..6746610 | 17..142 | 100 | -> | Plus |
| 2R | 6746670..6746923 | 143..396 | 100 | -> | Plus |
| 2R | 6747243..6748123 | 397..1277 | 100 | -> | Plus |
| 2R | 6748179..6748652 | 1278..1751 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:19:52 Download gff for
BS28396.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 2634175..2634428 | 143..396 | 100 | -> | Plus |
| arm_2R | 2634748..2635628 | 397..1277 | 100 | -> | Plus |
| arm_2R | 2633990..2634115 | 17..142 | 100 | -> | Plus |
| arm_2R | 2635684..2636157 | 1278..1751 | 100 | | Plus |
BS28396.pep Sequence
Translation from 16 to 1752
> BS28396.pep
MIRLNWLFRSSSVLLRSQVRLLHVGDANVLHSEVDKQSAEYKENAREMAS
LVGDLRNFTSQVLKGGGQKAIERHTSRGKLLARERINLLLDKGSPFLELS
ALAGHELYGEEVVNSGGIVTGVGRVCGTECLVVANDATVKGGSYYPITVK
KHLRAQEIAQENRLPCIYLVDSGGANLPRQADVFPDKLHFGRIFYNQANM
SAQGIPQIAVVMGSCTAGGAYVPAMADESIIVKKQGTIFLAGPPLVKAAT
GEEVSAEDLGGADLHCKTSGVTDHYALDDEHALYLARQIVSNLNLSATNS
YNDQLMHSSQVNFQTATPPSAVEEPRYDAEELYGIVGPNLTKSFDVREVI
ARIVDGSRFTEFKKLYGETLVCGFAKLYGHTVGIVGNNGVLFSESALKGA
HFIQLCAQRKIPLVFLQNITGFMVGRDAEANGIAKNGAKMVTAVACANVP
KFTVIIGGSYGAGNYGMCGRAYSPRFLYMWPNSRISVMGGTQAANVMAQI
TEDQRKRAGKEFSEEEAQKLKAPIVEMFEAEGSPYYSTARLWDDGIIDPA
NTRQILGLSLKAALNNAGQETKFGVFRM*
BS28396.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:20:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3267-PA | 578 | CG3267-PA | 1..578 | 1..578 | 2967 | 100 | Plus |
