BS28401.complete Sequence
890 bp assembled on 2012-04-25
GenBank Submission: KX804321
> BS28401.complete
GAAGTTATCAGTCGACATGGATGCCATCAAGAAGAAGATGCAAGCGATGA
AAGTCGACAAGGACGGAGCTCTGGAGCGCGCTCTCGTCTGCGAGCAGGAG
GCACGCGATGCTAACACCCGCGCCGAGAAGGCCGAGGAGGAGGCTCGCCA
GCTGCAGAAGAAGATCCAGACCGTTGAGAACGAGCTGGATCAGACCCAGG
AAGCCCTGACCCTGGTCACCGGCAAGCTGGAGGAGAAGAACAAGGCTCTG
CAGAACGCCGAATCCGAGGTTGCCGCTCTGAACCGTCGCATCCAGTTGCT
CGAAGAAGACTTGGAGCGCTCTGAGGAGCGTCTGGGCTCCGCCACAGCCA
AGCTGTCGGAAGCCTCTCAGGCCGCCGATGAGAGCGAACGGATACGAAAA
GCGCTTGAGAATCGCACAAATATGGAAGATGACAAAGTAGCTCTCTTGGA
GAACCAGTTAGCGCAAGCAAAATTAATTGCAGAAGAAGCTGATAAGAAAT
ACGAAGAGGTGGCCAGAAAACTCGTGCTCATGGAACAGGATCTGGAGCGT
TCCGAGGAGAAGGTCGAGCTCAGCGAAAGCAAAATTGTGGAGCTTGAGGA
GGAGCTGCGCGTGGTTGGCAACAACCTGAAGTCCCTGGAAGTCTCTGAGG
AGAAGGCCAACCAACGTGAGGAGGAGTACAAGAACCAGATCAAGACCCTC
AACACCCGTCTAAAGGAGGCTGAGGCTCGTGCTGAGTTCGCTGAACGCTC
CGTTCAGAAATTGCAGAAGGAAGTCGACAGGCTCGAAGACGACCTCGTCC
TGGAGAAGGAGCGCTACAAGGACATCGGAGACGATCTCGACACCGCCTTC
GTCGAGCTCATCCTCAAGGAATAAAAGCTTTCTAGACCAT
BS28401.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:23:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tm1-RN | 858 | CG4898-PN | 1..858 | 17..874 | 4290 | 100 | Plus |
| Tm1-RS | 858 | CG4898-PS | 1..858 | 17..874 | 3885 | 96.9 | Plus |
| Tm1-RL | 855 | CG4898-PL | 1..779 | 17..795 | 3445 | 96.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:23:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tm1-RN | 1253 | CG4898-RN | 88..948 | 14..874 | 4305 | 100 | Plus |
| Tm1-RS | 1253 | CG4898-RS | 88..948 | 14..874 | 3900 | 96.9 | Plus |
| Tm1-RL | 2194 | CG4898-RL | 88..869 | 14..795 | 3460 | 96.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:23:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15295113..15295247 | 257..391 | 675 | 100 | Plus |
| 3R | 32079331 | 3R | 15285227..15285355 | 129..257 | 645 | 100 | Plus |
| 3R | 32079331 | 3R | 15295426..15295546 | 390..510 | 605 | 100 | Plus |
| 3R | 32079331 | 3R | 15284646..15284763 | 14..131 | 590 | 100 | Plus |
| 3R | 32079331 | 3R | 15307588..15307675 | 787..874 | 440 | 100 | Plus |
| 3R | 32079331 | 3R | 15300745..15300823 | 578..656 | 395 | 100 | Plus |
| 3R | 32079331 | 3R | 15300104..15300180 | 503..579 | 370 | 98.7 | Plus |
| 3R | 32079331 | 3R | 15303151..15303222 | 717..788 | 360 | 100 | Plus |
| 3R | 32079331 | 3R | 15301009..15301074 | 654..719 | 330 | 100 | Plus |
| 3R | 32079331 | 3R | 15313115..15313197 | 617..699 | 220 | 84.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 12:23:33 has no hits.
BS28401.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-25 15:18:00 Download gff for
BS28401.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tm1-RN | 109..964 | 17..872 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:42:26 Download gff for
BS28401.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tm1-RN | 91..946 | 17..872 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:03:13 Download gff for
BS28401.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tm1-RN | 91..946 | 17..872 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 13:03:13 Download gff for
BS28401.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15300747..15300822 | 580..655 | 100 | -> | Plus |
| 3R | 15301011..15301073 | 656..718 | 100 | -> | Plus |
| 3R | 15303153..15303222 | 719..788 | 100 | -> | Plus |
| 3R | 15307590..15307673 | 789..872 | 100 | | Plus |
| 3R | 15295427..15295544 | 391..508 | 100 | -> | Plus |
| 3R | 15300110..15300180 | 509..579 | 100 | -> | Plus |
| 3R | 15284649..15284762 | 17..130 | 100 | -> | Plus |
| 3R | 15285229..15285354 | 131..256 | 100 | -> | Plus |
| 3R | 15295113..15295246 | 257..390 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:42:26 Download gff for
BS28401.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11110371..11110484 | 17..130 | 100 | -> | Plus |
| arm_3R | 11110951..11111076 | 131..256 | 100 | -> | Plus |
| arm_3R | 11120835..11120968 | 257..390 | 100 | -> | Plus |
| arm_3R | 11121149..11121266 | 391..508 | 100 | -> | Plus |
| arm_3R | 11125832..11125902 | 509..579 | 100 | -> | Plus |
| arm_3R | 11126469..11126544 | 580..655 | 100 | -> | Plus |
| arm_3R | 11126733..11126795 | 656..718 | 100 | -> | Plus |
| arm_3R | 11128875..11128944 | 719..788 | 100 | -> | Plus |
| arm_3R | 11133312..11133395 | 789..872 | 100 | | Plus |
BS28401.pep Sequence
Translation from 16 to 873
> BS28401.pep
MDAIKKKMQAMKVDKDGALERALVCEQEARDANTRAEKAEEEARQLQKKI
QTVENELDQTQEALTLVTGKLEEKNKALQNAESEVAALNRRIQLLEEDLE
RSEERLGSATAKLSEASQAADESERIRKALENRTNMEDDKVALLENQLAQ
AKLIAEEADKKYEEVARKLVLMEQDLERSEEKVELSESKIVELEEELRVV
GNNLKSLEVSEEKANQREEEYKNQIKTLNTRLKEAEARAEFAERSVQKLQ
KEVDRLEDDLVLEKERYKDIGDDLDTAFVELILKE*
BS28401.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:24:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tm1-PN | 285 | CG4898-PN | 1..285 | 1..285 | 1367 | 100 | Plus |
| Tm1-PS | 285 | CG4898-PS | 1..285 | 1..285 | 1328 | 96.5 | Plus |
| Tm1-PO | 285 | CG4898-PO | 1..285 | 1..285 | 1250 | 90.2 | Plus |
| Tm1-PM | 285 | CG4898-PM | 1..285 | 1..285 | 1250 | 90.2 | Plus |
| Tm1-PG | 285 | CG4898-PG | 1..285 | 1..285 | 1250 | 90.2 | Plus |
