BS28402.complete Sequence
1550 bp assembled on 2012-04-11
GenBank Submission: KX803469
> BS28402.complete
GAAGTTATCAGTCGACATGTTCAATTCGAGGGTATCATATTCTTCACCGC
AAGATGATGTTCTTACTGGAAGGGATGGAAGGGAAACCCAATCCTCGCTT
CTTCGTGACAAAATTCCAGCGCGTTTGGTGCTCTATTTCCTTTCGTGGTC
TGGCTTTCTGGTCTCTTTTATGATGCGCAATGATATGAATTTCGCATTGG
TGGCTATGATAGCGAACGACAATTCAACGCAAAACCAATCTCTTATCAAA
TCGCAACAAATATTGGGTACTGGGACTGATGACCAAAAAACAATAGTAAA
ATCTGTTGTAATAAGTTCCTTCTATTGGTGCTACGTGTTGTCGCAGGTGG
TTGGAGGGGTTGCCACAGAATTGTTTGGAACCAAGTGCGTATTTGGATGG
TCTCAGTTAGCAACAGCTCTATGTAGTTTTATGATGCCATCAGCAGCGCA
ATTACATTACATAGCTGTTATTGTGTTGCGGTCTATTCAGGGATTTGCTT
CTGGTTTGACGTGGCCTGCCATGTATGCAATAGTTGGATATTGGATACCT
CTTACGGAACGTTCACGTTTTATGTCAAGCTTTCAGGGTTTTAGTATTGG
TATTGGTTTAACGTATCCGTTATGTGGATTTATTTTATCAGAATGGGGTT
GGCCATATATATTTTATACTACTGGTACTTTAGGGCTTGGATGGTGTATA
CTATGGTATTTACTTGCTTTTAATACACCACGCGAGCACCCTCGTATTAC
TAAAGATGAATTGAATTATATAGAGCTAAACGTTAAAAAAGAAGTAAACA
GTAGTGTTAAAGTTAAAGTGCCTTGGCTGCAAATATTTAAATCCATACCT
GCTTGGGCGATTGCTATAACAACTTTTGGACGAATATTTGTTCATTACAT
TTTTATTGTTAATGGTCCGACATTTATGGGAAATGTTTTAAAGTTTAATT
TTGAAACAAATGGTTTTCTATCCGGTGTTCCATTTATTTGTTCATATATA
TCATCAGTACTATTTTGTTATATTGCCGACAAAATTGTATTTTATAAGGT
TTTGTGTCTTACTAATGTAAGAAAAGTATTTACTGCTCTATCACAAATTA
TTCCTGGGGTGTTAATATACTGTATTGGTTATATAGACAATGTGTACATT
TTGTTAACGGTATGGTTTATAGCTGTGATATTTATAACTGCATCTTATGC
TGGAGCTATGGCCAATATAATTGACTTAGCGCCAAATTATGGTCATTCCG
CAGCTGTTTTAGCATTTTGCCAAACAATTCATATGTCTGCATCCTTTATA
TCTCCGCTAACGGCTGGATTTATCGTCACACAAGAGGATTCCATTGATCA
ATGGCGAAGAGTATTTGAAGTCTCCGCAATTATTTCAATTCTGACGTATC
TATTTTATCAACTTTTCGGGACCGCAGAAATACAGACATGGAATAAAGGA
CTACCAGTTAATGATGATTCAGATGAAGGGAAGGTTTTATCGACAGCAAA
GGATGATTTAGATAATACTGGTGGACCAATTTAAAAGCTTTCTAGACCAT
BS28402.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:52:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| MFS17-RH | 1518 | CG40263-PH | 1..1518 | 17..1534 | 7590 | 100 | Plus |
| MFS17-RF | 1518 | CG40263-PF | 1..1518 | 17..1534 | 7590 | 100 | Plus |
| MFS17-RJ | 1374 | CG40263-PJ | 1..1321 | 17..1337 | 6605 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:52:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| MFS17-RH | 2052 | CG40263-RH | 451..1969 | 17..1535 | 7595 | 100 | Plus |
| MFS17-RF | 1873 | CG40263-RF | 272..1790 | 17..1535 | 7595 | 100 | Plus |
| MFS17-RJ | 2139 | CG40263-RJ | 272..1592 | 17..1337 | 6605 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:52:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 2521440..2522512 | 1337..265 | 5365 | 100 | Minus |
| 2R | 25286936 | 2R | 2494825..2495025 | 1535..1335 | 1005 | 100 | Minus |
| 2R | 25286936 | 2R | 2522572..2522731 | 266..107 | 800 | 100 | Minus |
| 2R | 25286936 | 2R | 2553783..2553873 | 107..17 | 455 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 04:52:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 297 | 6995 | 297 DMIS297 6995bp Derived from X03431 (g8146) (Rel. 36, Last updated, Version 2). | 638..820 | 1059..883 | 146 | 58.5 | Minus |
| Tabor | 7345 | Tabor TABOR 7345bp | 1068..1099 | 758..789 | 115 | 84.4 | Plus |
BS28402.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-11 18:06:10 Download gff for
BS28402.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG40263-RH | 469..1979 | 22..1532 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:20:40 Download gff for
BS28402.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MFS17-RF | 277..1787 | 22..1532 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:39:15 Download gff for
BS28402.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MFS17-RF | 277..1787 | 22..1532 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:39:15 Download gff for
BS28402.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 2522573..2522730 | 108..265 | 100 | <- | Minus |
| 2R | 2553783..2553868 | 22..107 | 100 | | Minus |
| 2R | 2494828..2495023 | 1337..1532 | 100 | <- | Minus |
| 2R | 2521441..2522511 | 266..1336 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:20:40 Download gff for
BS28402.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2RHet | 1265491..1265686 | 1337..1532 | 100 | <- | Minus |
| 2RHet | 1292104..1293174 | 266..1336 | 100 | <- | Minus |
| 2RHet | 1293236..1293393 | 108..265 | 100 | <- | Minus |
| 2RHet | 1324446..1324531 | 22..107 | 100 | | Minus |
BS28402.pep Sequence
Translation from 16 to 1533
> BS28402.pep
MFNSRVSYSSPQDDVLTGRDGRETQSSLLRDKIPARLVLYFLSWSGFLVS
FMMRNDMNFALVAMIANDNSTQNQSLIKSQQILGTGTDDQKTIVKSVVIS
SFYWCYVLSQVVGGVATELFGTKCVFGWSQLATALCSFMMPSAAQLHYIA
VIVLRSIQGFASGLTWPAMYAIVGYWIPLTERSRFMSSFQGFSIGIGLTY
PLCGFILSEWGWPYIFYTTGTLGLGWCILWYLLAFNTPREHPRITKDELN
YIELNVKKEVNSSVKVKVPWLQIFKSIPAWAIAITTFGRIFVHYIFIVNG
PTFMGNVLKFNFETNGFLSGVPFICSYISSVLFCYIADKIVFYKVLCLTN
VRKVFTALSQIIPGVLIYCIGYIDNVYILLTVWFIAVIFITASYAGAMAN
IIDLAPNYGHSAAVLAFCQTIHMSASFISPLTAGFIVTQEDSIDQWRRVF
EVSAIISILTYLFYQLFGTAEIQTWNKGLPVNDDSDEGKVLSTAKDDLDN
TGGPI*
BS28402.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:22:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| MFS17-PH | 505 | CG40263-PH | 1..505 | 1..505 | 2645 | 100 | Plus |
| MFS17-PF | 505 | CG40263-PF | 1..505 | 1..505 | 2645 | 100 | Plus |
| MFS17-PJ | 457 | CG40263-PJ | 1..440 | 1..440 | 2305 | 100 | Plus |
| MFS17-PG | 445 | CG40263-PG | 1..440 | 1..440 | 2305 | 100 | Plus |
| NaPi-T-PB | 524 | CG10207-PB | 3..492 | 32..499 | 676 | 29 | Plus |
