Clone BS28403 Report

Search the DGRC for BS28403

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:284
Well:3
Vector:pDNR-Dual
Associated Gene/TranscriptCG12567-RF
Protein status:BS28403.pep: full length peptide match
Sequenced Size:1058

Clone Sequence Records

BS28403.complete Sequence

1058 bp assembled on 2012-03-08

GenBank Submission: KX804348

> BS28403.complete
GAAGTTATCAGTCGACATGTTACTTATTAATATTGTAGTGCCAACAGAGC
ATCTCTTTGTCCTCAGTATTCATAAGTGTGACATTCGTCCATTTGTGGTA
GAGGGGAAACAAGTTGGTCTTATTAAGTCAGATGTTTTAAAACATCTCGA
AAAGTATCCTGAAGTATTTTGCATTCGTGCTTGTGAGCAAACTAAACAGG
GTTTGGTAGAGCTAAATCCTGCTTTTCGTGACTATAACGAGCGCACTGAG
CAACTGGAAAAGGTTTTGCGTAACTTGCGCTCCGAGGGACTTTTTCCTGC
ATTACAGGGATGGAGAGATGAGTATTTCGAGGTAAAAGCAGACTGCAGAG
CTCTACTTAAAATGGAACGAGCTGCTACTCCGCTCTTTGGAGTGCGCAAG
TACGGCGTCGATATAAACGGTTACGTAAGACATCCGACGCTTGGACTATG
CATTTGGCTGCAGCAGCGGTCAAACACAAAAGAGACCTGGCCTGGAAAGT
GGGACAATATGGTAGGCGGTGGACTTTCAGTCGGCTTTGGTATTAAGGAA
ACAGCCATTAAGGAGGCTGCAGAGGAGGCATCAATTCCTTCTGACCTAGT
CAAGAATTTGGTGTCCGCAGGATGTGTCTCATTTTACTTTGAAAGCCGAC
AAGGACTTTTTCCCAATACCGAATATGTTTTCGACTTAGAGCTACCACTT
GACTTTGTGCCTCAAAACGCTGACGGGGAGGTCCAGGCCTTTGAGCTGCT
AACAGCCAAGGACTGTGTGGAGCGCGTTTTTACTTCAGATTTCAAGACAA
CTTCAGCGCCTGTGGTGATTGATTTTCTTATCCGACACGGTCACATAACA
GCAGATGATGTTGTCGACTTCACACAAATCGTTGAGCTCTTGCACGTGCC
CTTACAGTCCATATATACGTACAAGACACGCTTTGAGCAATCCATAAAAC
AACCTCAATTCTTGCCAGGTGATTCCAAAAACTGTAACTGTGCAATATTT
CAGAAAATATCAATGGAGAATGGGCACAAGAAGGCGAATTAAAAGCTTTC
TAGACCAT

BS28403.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:01:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG12567-RF 1026 CG12567-PF 1..1026 17..1042 5130 100 Plus
CG12567-RG 1050 CG12567-PG 74..1050 66..1042 4885 100 Plus
CG12567-RD 1008 CG12567-PD 32..1008 66..1042 4885 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:01:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG12567-RF 1885 CG12567-RF 24..1049 17..1042 5130 100 Plus
CG12567-RG 1907 CG12567-RG 95..1071 66..1042 4885 100 Plus
CG12567-RD 1875 CG12567-RD 63..1039 66..1042 4885 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:01:31
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 23162212..23162876 860..196 3325 100 Minus
2L 23513712 2L 23323955..23324192 860..623 1070 96.6 Minus
2L 23513712 2L 23415916..23416153 623..860 1070 96.6 Plus
2L 23513712 2L 23161958..23162140 1042..860 915 100 Minus
2L 23513712 2L 23162924..23163058 200..66 675 100 Minus
2L 23513712 2L 23320508..23320637 1042..913 575 96.2 Minus
2L 23513712 2L 23174410..23174461 68..17 260 100 Minus
Blast to na_te.dros performed on 2014-11-28 05:01:32 has no hits.

BS28403.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-08 17:47:59 Download gff for BS28403.complete
Subject Subject Range Query Range Percent Splice Strand
CG12567-RF 29..1047 22..1040 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:35:45 Download gff for BS28403.complete
Subject Subject Range Query Range Percent Splice Strand
CG12567-RF 29..1047 22..1040 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:02:34 Download gff for BS28403.complete
Subject Subject Range Query Range Percent Splice Strand
CG12567-RF 29..1047 22..1040 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:02:34 Download gff for BS28403.complete
Subject Subject Range Query Range Percent Splice Strand
2L 23161960..23162139 861..1040 100 <- Minus
2L 23162212..23162872 200..860 100 <- Minus
2L 23162925..23163058 66..199 100 <- Minus
2L 23174413..23174456 22..65 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:35:45 Download gff for BS28403.complete
Subject Subject Range Query Range Percent Splice Strand
2LHet 21436..21569 66..199 100 <- Minus
2LHet 32924..32967 22..65 100   Minus
2LHet 20471..20650 861..1040 100 <- Minus
2LHet 20723..21383 200..860 100 <- Minus

BS28403.pep Sequence

Translation from 16 to 1041

> BS28403.pep
MLLINIVVPTEHLFVLSIHKCDIRPFVVEGKQVGLIKSDVLKHLEKYPEV
FCIRACEQTKQGLVELNPAFRDYNERTEQLEKVLRNLRSEGLFPALQGWR
DEYFEVKADCRALLKMERAATPLFGVRKYGVDINGYVRHPTLGLCIWLQQ
RSNTKETWPGKWDNMVGGGLSVGFGIKETAIKEAAEEASIPSDLVKNLVS
AGCVSFYFESRQGLFPNTEYVFDLELPLDFVPQNADGEVQAFELLTAKDC
VERVFTSDFKTTSAPVVIDFLIRHGHITADDVVDFTQIVELLHVPLQSIY
TYKTRFEQSIKQPQFLPGDSKNCNCAIFQKISMENGHKKAN*

BS28403.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:52:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG12567-PF 341 CG12567-PF 1..341 1..341 1795 100 Plus
CG12567-PG 349 CG12567-PG 20..349 12..341 1716 98.2 Plus
CG12567-PA 349 CG12567-PA 20..349 12..341 1716 98.2 Plus
CG12567-PD 335 CG12567-PD 10..335 16..341 1714 99.4 Plus
CG12567-PC 70 CG12567-PC 20..69 12..61 239 88 Plus