BS28410.complete Sequence
1574 bp assembled on 2012-04-18
GenBank Submission: KX802609
> BS28410.complete
GAAGTTATCAGTCGACATGAGTTCGGAATCTGGCCAACAAGACGTTGAAT
CGAAGCCAAAATCGGCTCGGAGTACCAGTGCTGGTCACGAATACGAGGAT
GTGCTTCAGATTATTGGATTCGGGCGAGTGCAATGGATCGTCCTTTTTGC
CGCAGGACTTCTCCTGATGATGGTCATAAACGAGACCATGGGCATGTCCT
ATATTACCATAGTATCCCAGTGCGATTTTGAGATGAACTCAATGGATAAG
GCGGTCATGAGTGCTGCCAGTTTTATCGGCATATTCTGTTCATCATACTT
TTGGGGCTACCTGAGTGACACTATAGGTCGCAGACCAGTGCTAATCTATA
CGACGATCGCCGGGAATTTCTTATCCTTATGCTCCACCGTCATTCCGAAC
TACTGGCTTTATGTGTTCATTCGTTTCGGTGTTGGATTTTTCATTGCGGG
AGCATCATCAACAACCTATGCGTATCTTGGGGAATTCTTCACTCCCCGTC
ATCGACCAATCGCCATTAATTACGCCAGTCTCTTCGTGGGTGTGTCCACT
GTCTATGTTCCAGCTACCGCCTGGCTAATACTTTCGATGGACTGGAGTGT
CAGTATAACCGATGGCTTCTCCTTACGTCCTTGGAGACTGCTGACCATAT
GCTACTTGCTGCCTGGTGTCGTGGGCACATTGATGTTGTGGTCGCTTCCC
GAGAGTCCCAAGATCCTAATGTCCTTGCACAAAACTGAAGAGGCTTTTGC
GGCAGTCGATTGGATTGCAGTGACGAATTCGGGCAAACACTTACACGAAT
TCAAGGTGCATAAACTAAAAACGGAAGATAACGCGAATGGGGAAAATATA
CTGCTCATATCCAAGTCAGCGTTTACAACAATCAAGAAAATGTGGAAGGA
AACTTTGCCGCTGCTAAGAAGACCTCACTTGCTGAACTTCGTCATCAGCT
GTACGATTATGTGTGGTCTATTTTTCAGTTCTTCGGGCATGGGTCTTTGG
TATCCAGAAATTCAAAATCGATTGGGCTCAAATGCGGCGGACGATTCAAT
GACTGTTTGCCAAGTTATTGATGCGTCAATAGATCAAATGCAAGCGAATG
CATCCAATAAAATTTGCGACGACCACATAAATACCAAGAGCTATATAGAC
ACCATTACCTATGGATCGGCCCTAATAGTTGGCTATATCTTGATGGGTCT
TGTTATAAACACGATTGGTCGCAAGGCCTCGATTTCAATTGGATTAACTC
TAGCTGGAGCTTGTGCAATAGCATTGATCTTTATAAAGGACGAGGTGGCC
ATAGTGGTTTGCTTCTGCTTGTATCTGGTACTACCGGGACTTTGTGTCTC
CATTCTGAGTGGAGCAGTCGTCGATTTGGTGCCCACCCATCTGCGCGGAA
AAGCGGTGTGCATTTGCCTGATGCTGGGACGCACGGGAAGTGTTTTCGGT
AGTAATATCATCGGAGTGCTCCTGGAATCCTATTGCTCTCTAACTTTCGG
GGTATTCTCTGGATTTGTGCTGGTATGTGCAAGTCTGACGTTACTGTTGC
CTATTTAAAAGCTTTCTAGACCAT
BS28410.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:59:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31106-RB | 1542 | CG31106-PB | 1..1542 | 17..1558 | 7710 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:59:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31106-RB | 1676 | CG31106-RB | 69..1610 | 17..1558 | 7710 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:59:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25218129..25218540 | 1112..1523 | 2060 | 100 | Plus |
| 3R | 32079331 | 3R | 25217389..25217699 | 562..872 | 1555 | 100 | Plus |
| 3R | 32079331 | 3R | 25216532..25216695 | 116..279 | 820 | 100 | Plus |
| 3R | 32079331 | 3R | 25216781..25216944 | 278..441 | 820 | 100 | Plus |
| 3R | 32079331 | 3R | 25217929..25218064 | 976..1111 | 680 | 100 | Plus |
| 3R | 32079331 | 3R | 25217212..25217333 | 442..563 | 610 | 100 | Plus |
| 3R | 32079331 | 3R | 25217761..25217868 | 871..978 | 540 | 100 | Plus |
| 3R | 32079331 | 3R | 25216365..25216465 | 17..117 | 505 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 04:59:06 has no hits.
BS28410.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-18 21:42:24 Download gff for
BS28410.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31106-RB | 67..1606 | 17..1556 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:21:17 Download gff for
BS28410.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31106-RB | 69..1608 | 17..1556 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:41:18 Download gff for
BS28410.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31106-RB | 69..1608 | 17..1556 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:41:18 Download gff for
BS28410.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25216365..25216464 | 17..116 | 100 | -> | Plus |
| 3R | 25216533..25216694 | 117..278 | 100 | -> | Plus |
| 3R | 25216782..25216944 | 279..441 | 100 | -> | Plus |
| 3R | 25217212..25217333 | 442..563 | 100 | -> | Plus |
| 3R | 25217391..25217697 | 564..870 | 100 | -> | Plus |
| 3R | 25217761..25217868 | 871..978 | 100 | -> | Plus |
| 3R | 25217932..25218064 | 979..1111 | 100 | -> | Plus |
| 3R | 25218129..25218540 | 1112..1523 | 100 | -> | Plus |
| 3R | 25218608..25218640 | 1524..1556 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:21:17 Download gff for
BS28410.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21044330..21044362 | 1524..1556 | 100 | | Plus |
| arm_3R | 21042087..21042186 | 17..116 | 100 | -> | Plus |
| arm_3R | 21042255..21042416 | 117..278 | 100 | -> | Plus |
| arm_3R | 21042504..21042666 | 279..441 | 100 | -> | Plus |
| arm_3R | 21042934..21043055 | 442..563 | 100 | -> | Plus |
| arm_3R | 21043851..21044262 | 1112..1523 | 100 | -> | Plus |
| arm_3R | 21043113..21043419 | 564..870 | 100 | -> | Plus |
| arm_3R | 21043483..21043590 | 871..978 | 100 | -> | Plus |
| arm_3R | 21043654..21043786 | 979..1111 | 100 | -> | Plus |
BS28410.pep Sequence
Translation from 16 to 1557
> BS28410.pep
MSSESGQQDVESKPKSARSTSAGHEYEDVLQIIGFGRVQWIVLFAAGLLL
MMVINETMGMSYITIVSQCDFEMNSMDKAVMSAASFIGIFCSSYFWGYLS
DTIGRRPVLIYTTIAGNFLSLCSTVIPNYWLYVFIRFGVGFFIAGASSTT
YAYLGEFFTPRHRPIAINYASLFVGVSTVYVPATAWLILSMDWSVSITDG
FSLRPWRLLTICYLLPGVVGTLMLWSLPESPKILMSLHKTEEAFAAVDWI
AVTNSGKHLHEFKVHKLKTEDNANGENILLISKSAFTTIKKMWKETLPLL
RRPHLLNFVISCTIMCGLFFSSSGMGLWYPEIQNRLGSNAADDSMTVCQV
IDASIDQMQANASNKICDDHINTKSYIDTITYGSALIVGYILMGLVINTI
GRKASISIGLTLAGACAIALIFIKDEVAIVVCFCLYLVLPGLCVSILSGA
VVDLVPTHLRGKAVCICLMLGRTGSVFGSNIIGVLLESYCSLTFGVFSGF
VLVCASLTLLLPI*
BS28410.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:23:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31106-PB | 513 | CG31106-PB | 1..513 | 1..513 | 2651 | 100 | Plus |
| CG31103-PB | 506 | CG31103-PB | 16..502 | 25..513 | 1097 | 43.7 | Plus |
| CG12783-PC | 465 | CG12783-PC | 1..465 | 51..513 | 615 | 31.2 | Plus |
| CG12783-PB | 465 | CG12783-PB | 1..465 | 51..513 | 615 | 31.2 | Plus |
| CG33233-PC | 489 | CG33233-PC | 5..484 | 25..512 | 609 | 27.6 | Plus |
