BS28417.complete Sequence
1148 bp assembled on 2012-04-25
GenBank Submission: KX805372
> BS28417.complete
GAAGTTATCAGTCGACATGGACAAGGTCTTTGCCGGCAACAGTGCGCGCA
AGGACAAGTTCGATGTAAACACCTTCCAGGACAACTCCCAGCTGCCCATT
GGATCCCGCAAGAAGAATAGCATCCGCACAAACGATCTGAACATCGAGGA
GGACTCGGAGTACGAGAGCCAAACGGAGCCATTGAATAATGCACAAAACT
ATGATGACATCCCCGAAGACTTCCCGCTAGTCTCGGAGAGAGCCGGACAC
GGCGATCACTCGGACAACTCGGTGGACGAGAAGCACGTCCAGTTTGGCGG
CAAAAAGAAGATCCCGCCCAGTTTGAGCTATGATGAACAGCCCACGGACC
AATCGCACGAACGTAAACGCAGAAGAAGCCGCCATCAGTATTATAGACAA
CGTAAATTCTCACATCAGGACAGCGTGGAACCCAAAAACAAGCTCGAGGA
AAACGGTGATGCAGGTGCGCGTCGCATCTCTGTGCAGCCTGAGGACACGG
CATTGGAGGAGGCTGATCTTAACGAGCTGAGATCACATCGTTCGGACGAC
CCGCGTGCCCTGCGCCGCCATAAGATCCATCACTCATCCATCAAGTTGCG
CGAGTTGCCCCAAATAACGATTTCCCCCTTCACCAACAAGAAGCCCGAGG
TGGATCATAGTCCTCATGAGATCTTTGTGCAATTGGATGAGCTCACAGGC
GTGGGCGAGGATCGCGAATGGAAGGAGACGGCCCGTTGGATCAAGTATGA
GGAGGACGTGGAGGAGGGCTCCGATCGTTGGGGCAAGCCCCATGTTGCCT
CCCTCTCCTTCCACTCGCTGCTCAATTTGCGTCGCTGCCTGGAAACGGGC
GTTGTCCTGCTCGATCTTAACGAGAAGGACCTGCCTGCCGTGGCCTATCG
CGTGGTAGAACAGATGGTGATCGAGGACCTGATTGACATCAATGACAAGC
CATCGGTGATGCGTTCGCTGCTCCTGCGCCATCGCCATGTCAACGAACAC
CAAGGTGTGCTGCCCTTCACCAAGAGGAAGTACAACAGCTACACCAGCCT
GCAGGTGAGATCAACCCCTATGCCGATATTCAATCATCCAAATGGTTTCG
CTAACACCCCCGACGCATTCTTGTCATTCTAAAAGCTTTCTAGACCAT
BS28417.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:24:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8177-RL | 1116 | CG8177-PL | 1..1116 | 17..1132 | 5580 | 100 | Plus |
| CG8177-RH | 3606 | CG8177-PH | 121..1158 | 17..1054 | 5190 | 100 | Plus |
| CG8177-RE | 3687 | CG8177-PE | 1..1038 | 17..1054 | 5190 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:24:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8177-RL | 1450 | CG8177-RL | 263..1378 | 17..1132 | 5580 | 100 | Plus |
| CG8177-RH | 4869 | CG8177-RH | 464..1501 | 17..1054 | 5190 | 100 | Plus |
| CG8177-RE | 5099 | CG8177-RE | 263..1300 | 17..1054 | 5190 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:24:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9779652..9779907 | 123..378 | 1280 | 100 | Plus |
| 3L | 28110227 | 3L | 9780764..9781008 | 669..913 | 1225 | 100 | Plus |
| 3L | 28110227 | 3L | 9781075..9781296 | 911..1132 | 1110 | 100 | Plus |
| 3L | 28110227 | 3L | 9780534..9780697 | 507..670 | 820 | 100 | Plus |
| 3L | 28110227 | 3L | 9780121..9780253 | 377..509 | 665 | 100 | Plus |
| 3L | 28110227 | 3L | 9779488..9779593 | 17..122 | 530 | 100 | Plus |
| 2L | 23513712 | 2L | 7234759..7234879 | 835..715 | 185 | 76.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 12:24:08 has no hits.
BS28417.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-25 15:18:01 Download gff for
BS28417.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8177-RL | 260..1373 | 17..1130 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:42:33 Download gff for
BS28417.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8177-RL | 263..1376 | 17..1130 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:03:20 Download gff for
BS28417.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8177-RL | 263..1376 | 17..1130 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 13:03:20 Download gff for
BS28417.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9781078..9781294 | 914..1130 | 100 | | Plus |
| 3L | 9779488..9779593 | 17..122 | 100 | -> | Plus |
| 3L | 9779652..9779907 | 123..378 | 100 | -> | Plus |
| 3L | 9780123..9780252 | 379..508 | 100 | -> | Plus |
| 3L | 9780536..9780697 | 509..670 | 100 | -> | Plus |
| 3L | 9780766..9781008 | 671..913 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:42:33 Download gff for
BS28417.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9772588..9772693 | 17..122 | 100 | -> | Plus |
| arm_3L | 9772752..9773007 | 123..378 | 100 | -> | Plus |
| arm_3L | 9773223..9773352 | 379..508 | 100 | -> | Plus |
| arm_3L | 9773636..9773797 | 509..670 | 100 | -> | Plus |
| arm_3L | 9773866..9774108 | 671..913 | 100 | -> | Plus |
| arm_3L | 9774178..9774394 | 914..1130 | 100 | | Plus |
BS28417.pep Sequence
Translation from 16 to 1131
> BS28417.pep
MDKVFAGNSARKDKFDVNTFQDNSQLPIGSRKKNSIRTNDLNIEEDSEYE
SQTEPLNNAQNYDDIPEDFPLVSERAGHGDHSDNSVDEKHVQFGGKKKIP
PSLSYDEQPTDQSHERKRRRSRHQYYRQRKFSHQDSVEPKNKLEENGDAG
ARRISVQPEDTALEEADLNELRSHRSDDPRALRRHKIHHSSIKLRELPQI
TISPFTNKKPEVDHSPHEIFVQLDELTGVGEDREWKETARWIKYEEDVEE
GSDRWGKPHVASLSFHSLLNLRRCLETGVVLLDLNEKDLPAVAYRVVEQM
VIEDLIDINDKPSVMRSLLLRHRHVNEHQGVLPFTKRKYNSYTSLQVRST
PMPIFNHPNGFANTPDAFLSF*
BS28417.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:24:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8177-PL | 371 | CG8177-PL | 1..371 | 1..371 | 1960 | 100 | Plus |
| CG8177-PD | 1161 | CG8177-PD | 1..346 | 1..346 | 1822 | 100 | Plus |
| CG8177-PH | 1201 | CG8177-PH | 41..386 | 1..346 | 1822 | 100 | Plus |
| CG8177-PB | 1201 | CG8177-PB | 41..386 | 1..346 | 1822 | 100 | Plus |
| CG8177-PF | 1201 | CG8177-PF | 41..386 | 1..346 | 1822 | 100 | Plus |
