BS28420.complete Sequence
1460 bp assembled on 2012-04-11
GenBank Submission: KX801971
> BS28420.complete
GAAGTTATCAGTCGACATGGCGACCATAAGTTTTTGCAATAGGAAATATG
TCCGTCTGTGGCCAGTGCTCATACTGTTCAATGTGGCACTCCTGCTGGTT
TGGAGGAACCTGCAGCAGGCCCAGAAACTGGCCGCATCTTCTAATACTGG
TGGGCAAAAGTCGGTAGGACTTTTGCTGTCCAACGAGTCGAATCCCTCAC
GTTTTTCTGCAAACTTCCATCTCGCCAATGATCAGCATCCGAAAATAATC
CGGCGAGAGGACTCCGCTCGCACCAAGGAATTGCGATCATTGCTCAAGTG
CCGCGACCGATCGCTCCGTTTCGAGAGGCTTCAGCACGGAGAGTTCTGGC
TGCTTCAGAATCTTGTCATGGGACGAAAGAGTCGGGAAGTCGGCTGTGCC
GAGTCCGTGACGTATACCACCAACGGGGACTTTACGTTCTTCGATAATCT
GGAAATGGTGGTATCACGTTGGCGTGCTCCAGTTAGTTTTGCCATCCACA
CTCCAGGTTATGATCTTAACACCACACTGGATGCCATTCGGTATGTGCGA
AACTGTTTGCCGGAGAGCGATAGCATCAAGGACTGGGTCTCCTTTCACGT
GTACTTCCCAAATCAGCACATGCCGGAATACGTGCCATATGACGAGGCCG
AGGTACTAATGTATCCGCACATGTGCACCCTGGCCAATGGATCGTTGGTA
TCGCCGCTCTACACGCAAATCCCAACCACGGATAGCTACAAGTCAAGGGC
CAACCTCACGTACCCCATCAATGTGGGCAGGAATATAGCCAGGCTGGCGA
CCAACACCCACTTCATCTTTGCCTGCGACATCGAGCTGTATCCCAGTGTG
GGCTTCGTCGACCAATTCCTGGACATGGTGGCCAGAAACCACAGTGTCCT
TGCACTGGATCCGCGGCAACGCAGAAGGGTGTATCCTCTACCCGTTTTCG
AGATCGAAACGGGCGCCAAAGTGCCGGTAGACAAGGACGAATTGTTGGCC
CTCTATCGAAAGCAGCAGGCGCAGGTGTTTCACCTGAAGCTTTGCCCCAC
ATGCCACACTATTCCTGGCCAAGAAGAGTGGCTCAATCGAACCTCTCGAG
CCGATGACCATCTGCACGTGTTTAGCAAGGCGCTGCGAAAATGGAAGTTC
CGAGCCTGGGAGCCCTTCTATGTAAGCGATAACACGGAGCCACTGTTCGA
CGAACGCGTCACGTGGGAGGGTCAGTCGAACAAGCGCATACAGAACTATG
CTATGTGCCTTTTGGACTACGAATACCATGTCTTGAGTCCCGCATTTCTA
GTGCACAGTCCTGGGATCAAGCAATCCAGCAAAGCTGACTCCACTCGTCT
TCAATACGCGAAGGAAATGACTAAATTTATTAAGAATAAAATCGAGCCCG
AATATCGTGTGCTCTTCGGAAAGAACTCAGCCTGCAAGACGTGAAAGCTT
TCTAGACCAT
BS28420.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:44:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11149-RE | 1428 | CG11149-PE | 1..1428 | 17..1444 | 7140 | 100 | Plus |
| CG11149-RD | 1428 | CG11149-PD | 1..1428 | 17..1444 | 7140 | 100 | Plus |
| CG11149-RC | 1428 | CG11149-PC | 1..1428 | 17..1444 | 7140 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:44:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11149-RE | 1999 | CG11149-RE | 291..1719 | 16..1444 | 7145 | 100 | Plus |
| CG11149-RD | 1898 | CG11149-RD | 190..1618 | 16..1444 | 7145 | 100 | Plus |
| CG11149-RC | 1941 | CG11149-RC | 233..1661 | 16..1444 | 7145 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:44:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5718656..5719431 | 1243..468 | 3880 | 100 | Minus |
| 2L | 23513712 | 2L | 5719511..5719963 | 468..16 | 2265 | 100 | Minus |
| 2L | 23513712 | 2L | 5718401..5718604 | 1444..1241 | 1020 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 04:44:34 has no hits.
BS28420.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-11 12:37:42 Download gff for
BS28420.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11149-RC | 234..1660 | 17..1443 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:19:55 Download gff for
BS28420.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11149-RC | 234..1660 | 17..1443 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:35:57 Download gff for
BS28420.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11149-RC | 234..1660 | 17..1443 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:35:57 Download gff for
BS28420.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5718402..5718601 | 1244..1443 | 100 | <- | Minus |
| 2L | 5718656..5719430 | 469..1243 | 100 | <- | Minus |
| 2L | 5719511..5719962 | 17..468 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:19:55 Download gff for
BS28420.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5718402..5718601 | 1244..1443 | 100 | <- | Minus |
| arm_2L | 5718656..5719430 | 469..1243 | 100 | <- | Minus |
| arm_2L | 5719511..5719962 | 17..468 | 100 | | Minus |
BS28420.pep Sequence
Translation from 16 to 1443
> BS28420.pep
MATISFCNRKYVRLWPVLILFNVALLLVWRNLQQAQKLAASSNTGGQKSV
GLLLSNESNPSRFSANFHLANDQHPKIIRREDSARTKELRSLLKCRDRSL
RFERLQHGEFWLLQNLVMGRKSREVGCAESVTYTTNGDFTFFDNLEMVVS
RWRAPVSFAIHTPGYDLNTTLDAIRYVRNCLPESDSIKDWVSFHVYFPNQ
HMPEYVPYDEAEVLMYPHMCTLANGSLVSPLYTQIPTTDSYKSRANLTYP
INVGRNIARLATNTHFIFACDIELYPSVGFVDQFLDMVARNHSVLALDPR
QRRRVYPLPVFEIETGAKVPVDKDELLALYRKQQAQVFHLKLCPTCHTIP
GQEEWLNRTSRADDHLHVFSKALRKWKFRAWEPFYVSDNTEPLFDERVTW
EGQSNKRIQNYAMCLLDYEYHVLSPAFLVHSPGIKQSSKADSTRLQYAKE
MTKFIKNKIEPEYRVLFGKNSACKT*
BS28420.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:20:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11149-PE | 475 | CG11149-PE | 1..475 | 1..475 | 2528 | 100 | Plus |
| CG11149-PD | 475 | CG11149-PD | 1..475 | 1..475 | 2528 | 100 | Plus |
| CG11149-PC | 475 | CG11149-PC | 1..475 | 1..475 | 2528 | 100 | Plus |
| CG11149-PA | 493 | CG11149-PA | 1..493 | 1..475 | 2499 | 96.3 | Plus |
| CG11149-PB | 493 | CG11149-PB | 1..493 | 1..475 | 2499 | 96.3 | Plus |
