BS28422.complete Sequence
1511 bp assembled on 2012-04-25
GenBank Submission: KX800444
> BS28422.complete
GAAGTTATCAGTCGACATGACCGACAGCATCGCTGTGGACGACGGAGGAG
TGGATGAGTGTTGCGACTCCATCACCGAGCTGCCCAGCGCCTCGTTCCAG
CTCCAGCATCTGGTCAAAGGACGTCCGAAGCGGGCCAAAACGCGTGCACC
AACTCGGCCGTTGGTCACCACCGAGTGCGCCGGGGGCAGCAGGGAAATTG
GCGAAGGTTTGGAACACTTCTTCCGGCCCGGTTCTGTTACGCCCACTACC
CTGACTCCCCTAGTTTCTCCAACGTCGGAGGAATGCAGCTCCTTGTCGTT
TGTGGACAGTCCCACGATGAGCCGCGATGGGAATGGACATATGACCTCCG
AGGAGACCACTCCCATTCTGGAGGAACGCCGACCAATTAAATTGGAGCGC
CAGTCGCCATTGCTCAAAAGTGCGTCATGGGCCACCCGCTCCCGGTCCAC
GGACAATCTAGAGAAGTATTCGCCACTGGTGGGTCGTAAGTCCCCGCTGG
TCAAGATGCGAACTGAAGGAGGTCCCGGCTCGGGATCTGCCACCGGTGCT
GAGGAGACGTCTATGCCCAGTTCTAATCTGCTTAAGGCAACCGCCCGAGA
GGACAAAACGCGTTCGCCCAGCAGCGATTCGATCAAAAGCCATGCCGCAG
GCGAGGGTAGTGTTATTGTGAAGACTGGCAACGGCATCCTGCGAACACCC
ATAGTTCTGCAGAAGCCGCGTCCGTGGTCGGTTGTTGGAAGCGAGCCAAA
GGCAGGCGGAGATCTTATTACAGGCAATGGGAATGCCGACTCCAGCAAGA
CCACGCCGGACAAACTAGAAGAAGATGATGTCGAGATAGTGACATTTGGA
AATACCTGCAGTGGCTCAATTGTTGGCATCACGCCGGGCATAGCTTTATC
CACCAGTGGCGGTGGAAGCATTGTGGGCATTACACCAGGAGGTGCCCTTG
AAAAGAAGTCTGTGCGAGAACTAGCAGCGGGTCTAAACAGGATGGAACTC
CCCCTAAAGCCGCCCGTTATGCCAAGAACCCTGCTGAACGCGACTAGTGT
CCGCACAAGCACGTCCTCCACAGGCTCCACCTCCAATAGTGTATCAGTCA
GCTCATCCACGAACGCCAACACATCGATGACAGTATTAAACCAGAGCCAG
ACACGATCACGGATCGTAAGCTCGACCAGCAGCACTGACAGCACCGAGAC
CATCACAGAGCGCAGCACCACCAGCACTAGCAGCAGTTCATCCAGCAGCT
ACGAGAAGCAGCATGCCAAGGCCTGTGCCAATTTAATCAGCAACGAAATC
CTCAGTATGCGCAACGGACAGTTGGGCGCCAAGTCTGGAAGCTGCGCAGA
AAGTGGTGGTGTGAAGCGGATAGCCGGCAAGGAGATCTCCACGCTATTCG
AGGAGACATTAGTTGAAGAACTGCAGCAGAGCATGGCGACCAGACGCGGT
TTTAGAGACTCGACCTACACCAAGGAGGATGTCGTTGATTTATAAAAGCT
TTCTAGACCAT
BS28422.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:23:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1399-RF | 4461 | CG1399-PF | 2983..4461 | 17..1495 | 7380 | 99.9 | Plus |
| CG1399-RD | 1479 | CG1399-PD | 1..1479 | 17..1495 | 7380 | 99.9 | Plus |
| CG1399-RC | 4290 | CG1399-PC | 2899..4285 | 17..1403 | 6920 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:23:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1399-RF | 6319 | CG1399-RF | 3739..5217 | 17..1495 | 7380 | 99.9 | Plus |
| CG1399-RD | 2893 | CG1399-RD | 313..1791 | 17..1495 | 7380 | 99.9 | Plus |
| CG1399-RC | 5968 | CG1399-RC | 3655..5041 | 17..1403 | 6920 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:23:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7677997..7678405 | 1403..995 | 2045 | 100 | Minus |
| 2R | 25286936 | 2R | 7678868..7679276 | 824..416 | 2030 | 99.8 | Minus |
| 2R | 25286936 | 2R | 7679340..7679744 | 421..17 | 2025 | 100 | Minus |
| 2R | 25286936 | 2R | 7678692..7678808 | 939..823 | 585 | 100 | Minus |
| 2R | 25286936 | 2R | 7677642..7677736 | 1495..1401 | 475 | 100 | Minus |
| 2R | 25286936 | 2R | 7678570..7678629 | 995..936 | 285 | 98.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 12:23:44 has no hits.
BS28422.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-25 15:18:01 Download gff for
BS28422.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1399-RC | 3643..5028 | 17..1402 | 99 | -> | Plus |
| CG1399-RC | 5292..5382 | 1403..1493 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:42:29 Download gff for
BS28422.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1399-RD | 313..1789 | 17..1493 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:03:15 Download gff for
BS28422.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1399-RD | 313..1789 | 17..1493 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 13:03:15 Download gff for
BS28422.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7678693..7678806 | 825..938 | 100 | <- | Minus |
| 2R | 7677644..7677734 | 1403..1493 | 100 | <- | Minus |
| 2R | 7677998..7678404 | 996..1402 | 100 | <- | Minus |
| 2R | 7678570..7678626 | 939..995 | 98 | <- | Minus |
| 2R | 7678868..7679272 | 420..824 | 100 | <- | Minus |
| 2R | 7679342..7679744 | 17..419 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:42:29 Download gff for
BS28422.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3565149..3565239 | 1403..1493 | 100 | <- | Minus |
| arm_2R | 3565503..3565909 | 996..1402 | 100 | <- | Minus |
| arm_2R | 3566075..3566131 | 939..995 | 98 | <- | Minus |
| arm_2R | 3566198..3566311 | 825..938 | 100 | <- | Minus |
| arm_2R | 3566373..3566777 | 420..824 | 100 | <- | Minus |
| arm_2R | 3566847..3567249 | 17..419 | 100 | | Minus |
BS28422.pep Sequence
Translation from 16 to 1494
> BS28422.pep
MTDSIAVDDGGVDECCDSITELPSASFQLQHLVKGRPKRAKTRAPTRPLV
TTECAGGSREIGEGLEHFFRPGSVTPTTLTPLVSPTSEECSSLSFVDSPT
MSRDGNGHMTSEETTPILEERRPIKLERQSPLLKSASWATRSRSTDNLEK
YSPLVGRKSPLVKMRTEGGPGSGSATGAEETSMPSSNLLKATAREDKTRS
PSSDSIKSHAAGEGSVIVKTGNGILRTPIVLQKPRPWSVVGSEPKAGGDL
ITGNGNADSSKTTPDKLEEDDVEIVTFGNTCSGSIVGITPGIALSTSGGG
SIVGITPGGALEKKSVRELAAGLNRMELPLKPPVMPRTLLNATSVRTSTS
STGSTSNSVSVSSSTNANTSMTVLNQSQTRSRIVSSTSSTDSTETITERS
TTSTSSSSSSSYEKQHAKACANLISNEILSMRNGQLGAKSGSCAESGGVK
RIAGKEISTLFEETLVEELQQSMATRRGFRDSTYTKEDVVDL*
BS28422.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:24:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1399-PF | 1486 | CG1399-PF | 995..1486 | 1..492 | 2469 | 100 | Plus |
| CG1399-PD | 492 | CG1399-PD | 1..492 | 1..492 | 2469 | 100 | Plus |
| CG1399-PC | 1429 | CG1399-PC | 967..1428 | 1..462 | 2321 | 100 | Plus |
| CG1399-PA | 655 | CG1399-PA | 193..654 | 1..462 | 2321 | 100 | Plus |
| CG1399-PB | 1452 | CG1399-PB | 990..1451 | 1..462 | 2321 | 100 | Plus |
