BS28429.complete Sequence
1397 bp assembled on 2012-04-18
GenBank Submission: KX806420
> BS28429.complete
GAAGTTATCAGTCGACATGCAGTTCGATCCGAAGACACGATGCGGTGGCA
GCGTGGTTAGCTTTACCGTTATGCTGCTGCTGATCATCGGCGCCGATTTC
GCCGCTGGAAGGCCTGATGTGCGCGAGTCGCCCTTCGCCCTCAATCTGCA
GCCTCCGCTGCTGCAGTCGGACGTGACCTTCAGTTCAGGCCAGGGGGGTG
GTGCCGGGCCGAAGGCCATCGACAGCTACGGCAACCCCATCGACGCCCTG
CGACCCATCGATACGCCCGACGGGCGCAAGGTGGTCAGCGCCCAGGGCGT
TCAGTTTGAGATACCCACATACGCCTCGGGAATCACGGAGATCCGGCGGC
CGGCCGATGATCTTCTGCCGCCACACATTGATAACACGCCGAAGGATTCG
AGCAGCAGTGGCAGCAGCAGCACCACAACTTTCGTCAACACCACTCCAAG
CCCGTTGGATGCTGGCAACCCATTCGATTCGGCCACCATTCCTGCCTGGC
TGCGTGACTTCGACTATCCGGATGTCGGACCGGGCGTGCCCTTTGACCCG
GACAACTTTGGAACAGCGTCGGCCAGCAGCACCCGTAACCCCACCAATCC
GCCACGTCCCCCCACCGTCCCGCCCGTTTCCTCCGCTTTTCCATCCAAAG
TCACGCTTCCGCTTCCAGGCAGCAGCATCAGTAGCAGTAGCAGTGAGGAA
CCACAGCTGGTACTCGTTCCGCCCGCTGACCGCGCGGAGGCCGCTTCTGG
TTCCGACTCCCAATTCGGCCCCAATCCTGGACAACTGACCCAACCCACTT
CCAACTCTGTCACGCCTTTTGCAGCCCGCTTCGAGCCATCGGCCAGCAGC
TCCAGCTCCCAGAGCGTTGAACCCTTCCCGCCCAGCAAGGTGGAGTACAC
CAAGAGCGACGAGGGCAAGGTCATCAGCACGCCGGTCACCAACAATCAGC
GAAAAACGGAGACTGTTGCACCTCCAGCTAGCAACACCGGGAAGTACACG
GGAGGATTTGGTGCACCGCCTGGCCTACTGCGCCCACAGTCAACCAATCC
CTCGGTCTCCAATTCGGGACCCAATTCCAATCCGAGACCCGGCTCCGACA
TCTATGTGGCTGGCAACCAACACGAGTTCAGCAGTGTTTTGAAGGCGAAC
AAGGCACGACCCACCGTGAATCCGGGTCGCTACAACGGCGGATTCGGGGC
GCCCACGGGAGTTCTTTCGCCTCAAGCGCAGGCGGAGCCACGTCCCTTCC
AGCCAATTAACCAGCGAACGGAACACAGGGAACAGTCATCCGGTGGCAAC
AGGAGGACTGAGAGCCGTTTTGGTGGACCGCCTGGCATTCTCGTGCCCTT
CGACAACGTGCAGCGAACTGGGGGGCAGTAGAAGCTTTCTAGACCAT
BS28429.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:59:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11073-RB | 1365 | CG11073-PB | 1..1365 | 17..1381 | 6810 | 99.9 | Plus |
| CG11073-RD | 2427 | CG11073-PD | 1426..2427 | 380..1381 | 4995 | 99.9 | Plus |
| CG11073-RC | 2691 | CG11073-PC | 1690..2691 | 380..1381 | 4995 | 99.9 | Plus |
| CG11073-RD | 2427 | CG11073-PD | 1..103 | 17..119 | 515 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:59:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11073-RB | 1964 | CG11073-RB | 454..1821 | 17..1384 | 6825 | 99.9 | Plus |
| CG11073-RD | 3026 | CG11073-RD | 1879..2883 | 380..1384 | 5010 | 99.9 | Plus |
| CG11073-RC | 3290 | CG11073-RC | 2143..3147 | 380..1384 | 5010 | 99.9 | Plus |
| CG11073-RD | 3026 | CG11073-RD | 454..556 | 17..119 | 515 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:59:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22092142..22092718 | 956..380 | 2885 | 100 | Minus |
| 2R | 25286936 | 2R | 22091632..22092059 | 1384..957 | 2125 | 99.8 | Minus |
| 2R | 25286936 | 2R | 22094524..22094788 | 380..116 | 1325 | 100 | Minus |
| 2R | 25286936 | 2R | 22098982..22099081 | 116..17 | 500 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 04:59:36 has no hits.
BS28429.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-18 21:42:25 Download gff for
BS28429.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11073-RB | 646..2010 | 17..1381 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:21:19 Download gff for
BS28429.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11073-RB | 454..1818 | 17..1381 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:41:30 Download gff for
BS28429.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11073-RB | 454..1818 | 17..1381 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:41:30 Download gff for
BS28429.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22091635..22092059 | 957..1381 | 99 | <- | Minus |
| 2R | 22092142..22092717 | 381..956 | 100 | <- | Minus |
| 2R | 22094524..22094787 | 117..380 | 100 | <- | Minus |
| 2R | 22098982..22099081 | 17..116 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:21:19 Download gff for
BS28429.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17979140..17979564 | 957..1381 | 99 | <- | Minus |
| arm_2R | 17979647..17980222 | 381..956 | 100 | <- | Minus |
| arm_2R | 17982029..17982292 | 117..380 | 100 | <- | Minus |
| arm_2R | 17986487..17986586 | 17..116 | 100 | | Minus |
BS28429.pep Sequence
Translation from 16 to 1380
> BS28429.pep
MQFDPKTRCGGSVVSFTVMLLLIIGADFAAGRPDVRESPFALNLQPPLLQ
SDVTFSSGQGGGAGPKAIDSYGNPIDALRPIDTPDGRKVVSAQGVQFEIP
TYASGITEIRRPADDLLPPHIDNTPKDSSSSGSSSTTTFVNTTPSPLDAG
NPFDSATIPAWLRDFDYPDVGPGVPFDPDNFGTASASSTRNPTNPPRPPT
VPPVSSAFPSKVTLPLPGSSISSSSSEEPQLVLVPPADRAEAASGSDSQF
GPNPGQLTQPTSNSVTPFAARFEPSASSSSSQSVEPFPPSKVEYTKSDEG
KVISTPVTNNQRKTETVAPPASNTGKYTGGFGAPPGLLRPQSTNPSVSNS
GPNSNPRPGSDIYVAGNQHEFSSVLKANKARPTVNPGRYNGGFGAPTGVL
SPQAQAEPRPFQPINQRTEHREQSSGGNRRTESRFGGPPGILVPFDNVQR
TGGQ*
BS28429.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:23:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11073-PB | 454 | CG11073-PB | 1..454 | 1..454 | 2385 | 100 | Plus |
| CG11073-PD | 808 | CG11073-PD | 474..808 | 120..454 | 1765 | 99.7 | Plus |
| CG11073-PC | 896 | CG11073-PC | 562..896 | 120..454 | 1765 | 99.7 | Plus |
| CG11073-PA | 1056 | CG11073-PA | 722..1056 | 120..454 | 1765 | 99.7 | Plus |
| CG11073-PE | 307 | CG11073-PE | 108..307 | 256..454 | 981 | 93.5 | Plus |
| CG11073-PC | 896 | CG11073-PC | 1..169 | 1..169 | 646 | 78.3 | Plus |
| CG11073-PA | 1056 | CG11073-PA | 1..137 | 1..137 | 636 | 89.8 | Plus |
| CG11073-PD | 808 | CG11073-PD | 1..509 | 1..447 | 198 | 24 | Plus |
