BS28443.complete Sequence
671 bp assembled on 2012-04-25
GenBank Submission: KX803736
> BS28443.complete
GAAGTTATCAGTCGACATGGAGAACGTTTCCAAGATTTGGCTGGGTCCCC
TGCCCCAGGATTCGCCGTACGTAAAGCCCTTCCGGCTGTACTACGTCCAG
AATGGCGTGGAGAAGAACTGGGACCTGCTGAAGGTCCACGATAGTGTGGC
TATTATCTTGTACAACACTTCTCGCCAGAAACTGGTCCTGGTCCGCCAGT
TCCGACCCGCCGTCTACCACGGCATCATCTCCAGCGCCAAGGGCACCTTC
GATGAGGTGGACCTCAAGGAGTTCCCGCCCGCCATCGGTGTCACCTTGGA
ACTGTGCGCCGGCATCGTGGACAAAAACAAAAGCTGGGTGGAAATCGCTC
GGGAGGAAGTGGTCGAGGAGTGTGGCTACGATGTGCCCGTGGAACGCATT
GAGGAAGTCATGGTCTACAGATCTGGAGTTGGTTCATCGGGTGCCAAGCA
GACCATGTACTACTGCGAGGTGACCGATGCGGACAAGGCCACAGGTGGTG
GCGGCGTCGACGACGAGATCATCGAGGTGGTGGAGCTGTCCCTGGAGGAG
GCCAAGCGGATGATCCAACAGGGAGCCGTCAACAACAGCCCGCCCAGCTG
CCTGATGGGCCTGATGTGGTTCTTCGCCAACAGGGCACCCGGTGCGAAGG
CCTAGAAGCTTTCTAGACCAT
BS28443.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:24:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42813-RA | 639 | CG42813-PA | 1..639 | 17..655 | 3195 | 100 | Plus |
| CG42813-RB | 639 | CG42813-PB | 1..639 | 17..655 | 3195 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:24:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42813-RA | 957 | CG31063-RA | 51..691 | 16..656 | 3205 | 100 | Plus |
| CG42813-RB | 1366 | CG42813-RB | 90..730 | 16..656 | 3205 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:24:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27228068..27228472 | 420..16 | 2025 | 100 | Minus |
| 3R | 32079331 | 3R | 27227706..27227944 | 656..418 | 1195 | 100 | Minus |
| 3L | 28110227 | 3L | 15100462..15100643 | 599..418 | 685 | 91.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 12:24:22 has no hits.
BS28443.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-25 15:18:02 Download gff for
BS28443.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42813-RA | 52..690 | 17..655 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:42:38 Download gff for
BS28443.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42813-RA | 52..690 | 17..655 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:03:25 Download gff for
BS28443.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42813-RB | 91..729 | 17..655 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 13:03:25 Download gff for
BS28443.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27227707..27227941 | 421..655 | 100 | <- | Minus |
| 3R | 27228068..27228471 | 17..420 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:42:38 Download gff for
BS28443.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 23053429..23053663 | 421..655 | 100 | <- | Minus |
| arm_3R | 23053790..23054193 | 17..420 | 100 | | Minus |
BS28443.pep Sequence
Translation from 16 to 654
> BS28443.pep
MENVSKIWLGPLPQDSPYVKPFRLYYVQNGVEKNWDLLKVHDSVAIILYN
TSRQKLVLVRQFRPAVYHGIISSAKGTFDEVDLKEFPPAIGVTLELCAGI
VDKNKSWVEIAREEVVEECGYDVPVERIEEVMVYRSGVGSSGAKQTMYYC
EVTDADKATGGGGVDDEIIEVVELSLEEAKRMIQQGAVNNSPPSCLMGLM
WFFANRAPGAKA*
BS28443.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:24:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42813-PA | 212 | CG31063-PA | 1..212 | 1..212 | 1108 | 100 | Plus |
| CG42813-PB | 212 | CG42813-PB | 1..212 | 1..212 | 1108 | 100 | Plus |
| CG42814-PA | 237 | CG31063-PA | 27..233 | 4..208 | 641 | 54.6 | Plus |
