BS28474.complete Sequence
1910 bp assembled on 2012-04-11
GenBank Submission: KX804033
> BS28474.complete
GAAGTTATCAGTCGACATGGCACGCAAGAGCCACATGTACAACGCAATAC
CCGCCGGCTTTGAGTCGGACGAGGAGAACATGGAGAACCTAATGAGCAAC
CTGAAGATCAAGCGCTTGGAGGACATCACGACAGGTGCTGGAATCGACGG
CTGTAACTTTGACGCCACCTTGGACGCAAAGGCGGAGGAGTTTTTTAAGC
TGTTCCGCGAGAAGTGGAACATGTATAGCAAGAAAAAGTCGCCACATCTG
CGCCAGGAATTTGGAAGGGCTTTAATGGGCCATCAGGATCCTTTGCTCCT
GGCCCTGAAGATCTTCGCCAACTGCCCAGACAGCAGCAACATCAAGACGA
AGAGCTTGTCACATTTTGTGCTGGACACGGTTTGCAAGCTCCACAAGGAT
TTCCCGCATCTTGGCGAGGGCTGTGATCCCAACACCAGCATGATAGCCTT
TAACTTTGTCAAGACCTCCGGCTTGCTGGCCCTCAACAATGCTGTTATCC
ATGCCTACAGTCTACGTCAGATCCGCGACCTACTGCTTCCCAAGTTGCGC
GAACTCCTGGACAACGGGCTTTACAAAGAGGTCACCCAATGGTCCATCAG
TCTGCAGTTGACGCACGAGTTCGACATGCTGGAACTGGCTTTCCCGCTGA
TTGCAATTGAGAAACTACCACTGGCCGAGGAATATCTGGACCATGCCACA
CAGCAGAGGTTGCCCTTTGTCAAGTTCTTGGATTCGTTGCTGCACAAGGA
GAAGTCGGTTTTAGAGCTCTGCGAGCATCTACTCGATCGGTACAAAAATC
TCAAAATTTCCCATAACGTGCTCAGCTATCGGCCTATGGCCAAGATTGTG
GCGCGACTGGCCAAGAAGTATGGTTTTGACGACGCCGTCACGCCCAACTA
TAAGTTCACGAAGACGTGCAGCTACTTGCATTACCTTTACCGCGAGTACG
AGAAGACGCGCATGAACCTGGCCAGTTTCCGGGAGGTTGTGAGCGTCCAT
GCCTTTAACCACGAGCTGCGCACGGACTTCGTAAAGTATTTGGCCTCTGC
TGGAGCTCATTCTGAAGCCATCTACTGGTACACGGAGTTCAATATTGACC
CGAAAGATTGTCCGTTGGAGATCGAGACGCAGGTATCGCAAAACGGTGCT
GGAAAAGCGTCAGGCTGGGAATCCCCCGGCAAGGAACGCTGTCCTTCGAG
TAGATGTGATATGTACCTGACCATGGACCTGCCCGACGAGTGCCTTATCA
TTGTGAACAAGGCTGATGAGTTCGATCGTATGTTATACCATCTGCAGCAG
GAGTGCGTCATATACCTGGATTCTGAATGGATGCAGAGCGTGTGCGGAGA
CAATCAGCTGTGCGTGCTACAGATCGCCACCGGCCACAATGTCTACCTGA
TCGATTGCCTGGCGCGGGAGAGCTTACGCTCGGAACACTGGCGCTTGCTG
GGCGCGAATATCTTTAATAACGTGAACATCCGTAAGGTGGGGTTCTCTAT
GGTCAGTGATCTCAGTGTATTGCAGCGGTCACTGCCCCTGCAACTGCGCC
TTCAAATGCCTCACCACTACTTGGACCTTCGCAATCTCTGGTTGGAGTTA
AAAAAGCAGCGCTTCGGCGTTGAACTTCCCTTCGGCAATGTTAACCGGGC
AGGAGACGCCCTTACGGATCTCTCATTGGCATGCCTTGGCAAGAAACTGA
ACAAATCAAACCAGTGCTCAAACTGGGCCAATAGACCGCTGCGTCGCGAG
CAGATTCTTTATGCAGCCATCGATGCGCGGTGTTTGATGCTGATCTACAA
CACGCTCATTGAACGCGTGTCCTTCATACAAGCGGTTATCGAAAAGAGCA
TCGCCAGCAATAACTTTCTCAGGCGGGGTGCCCATGTTAAGTGAAAGCTT
TCTAGACCAT
BS28474.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:44:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nbr-RA | 1878 | CG9247-PA | 1..1878 | 17..1894 | 9390 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:44:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nbr-RA | 2335 | CG9247-RA | 82..1959 | 17..1894 | 9390 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:44:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 21161198..21162177 | 1766..787 | 4900 | 100 | Minus |
| 2L | 23513712 | 2L | 21162233..21163002 | 786..17 | 3850 | 100 | Minus |
| 2L | 23513712 | 2L | 21161012..21161142 | 1894..1764 | 655 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 04:44:43 has no hits.
BS28474.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-11 12:37:42 Download gff for
BS28474.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9247-RA | 86..1962 | 17..1893 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:19:57 Download gff for
BS28474.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nbr-RA | 82..1958 | 17..1893 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:36:01 Download gff for
BS28474.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nbr-RA | 82..1958 | 17..1893 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:36:01 Download gff for
BS28474.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 21161013..21161139 | 1767..1893 | 100 | <- | Minus |
| 2L | 21161198..21162177 | 787..1766 | 100 | <- | Minus |
| 2L | 21162233..21163002 | 17..786 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:19:57 Download gff for
BS28474.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 21161013..21161139 | 1767..1893 | 100 | <- | Minus |
| arm_2L | 21161198..21162177 | 787..1766 | 100 | <- | Minus |
| arm_2L | 21162233..21163002 | 17..786 | 100 | | Minus |
BS28474.pep Sequence
Translation from 16 to 1893
> BS28474.pep
MARKSHMYNAIPAGFESDEENMENLMSNLKIKRLEDITTGAGIDGCNFDA
TLDAKAEEFFKLFREKWNMYSKKKSPHLRQEFGRALMGHQDPLLLALKIF
ANCPDSSNIKTKSLSHFVLDTVCKLHKDFPHLGEGCDPNTSMIAFNFVKT
SGLLALNNAVIHAYSLRQIRDLLLPKLRELLDNGLYKEVTQWSISLQLTH
EFDMLELAFPLIAIEKLPLAEEYLDHATQQRLPFVKFLDSLLHKEKSVLE
LCEHLLDRYKNLKISHNVLSYRPMAKIVARLAKKYGFDDAVTPNYKFTKT
CSYLHYLYREYEKTRMNLASFREVVSVHAFNHELRTDFVKYLASAGAHSE
AIYWYTEFNIDPKDCPLEIETQVSQNGAGKASGWESPGKERCPSSRCDMY
LTMDLPDECLIIVNKADEFDRMLYHLQQECVIYLDSEWMQSVCGDNQLCV
LQIATGHNVYLIDCLARESLRSEHWRLLGANIFNNVNIRKVGFSMVSDLS
VLQRSLPLQLRLQMPHHYLDLRNLWLELKKQRFGVELPFGNVNRAGDALT
DLSLACLGKKLNKSNQCSNWANRPLRREQILYAAIDARCLMLIYNTLIER
VSFIQAVIEKSIASNNFLRRGAHVK*
BS28474.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:20:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nbr-PA | 625 | CG9247-PA | 1..625 | 1..625 | 3286 | 100 | Plus |
