Clone BS28485 Report

Search the DGRC for BS28485

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:284
Well:85
Vector:pDNR-Dual
Associated Gene/TranscriptCG4449-RA
Protein status:BS28485.pep: full length peptide match
Sequenced Size:1307

Clone Sequence Records

BS28485.complete Sequence

1307 bp assembled on 2012-03-08

GenBank Submission: KX800251

> BS28485.complete
GAAGTTATCAGTCGACATGTCCGACGACGACTGCGATATATTCAGTGCTG
CTCGCAAGCGGATTCCCGAAATAGCTTTGCCCAAGAATCCTTACAATCTT
GGCAATGATTCCTTCTCCAAGGAGGTGGACTACGATTTCATTGAAGACCT
CCCCAAGAAATCAACTAAAACTGGCAAACGAAAGAACCCTGCAGCGACGC
GGAAAAATCCACCCAAAAGTCAGGATGATGCTTCGCCACCAAAACAGGCA
GAACATAAGGCTGTGGAGCCAGAAGAGGATATGAGAACAGAGCGCTCCCT
ATCACCGGTATCCCTGTTGATATTGGAGATGGAAAAGAAAAATGGCCAGC
AATCGGATGTGGAGAAGCACGCCAAAGAAAATGACGTTGGTCCTGTGGCC
AGACGCACACGGTCATCGTTAAATAGGTCAGAAATGGCGCCACCACCTGT
TTCACCGACTGTGGAGGTGCCCACACAGACGAAACCAAAGAAGCGCGGCC
AAAAAAAGAGAACATCTCTAACAACCACAACCAGCAACTCTGCTTCGATG
GAGGTCTCATTGCCAAGCATTGTAGGTCAGAACAATGAGCACATTAGCAG
ACGGTGGACGTTGGCCGAAGTTGCAGCCCGTTCCAAAGTGGTGGACAGTA
TTGATCTGGTATCTGCGGTCGCTCCCCGAGTGGAGGGATTTGTTAATCTA
GACTCTGAAGACGAGGGTGAAAAGGAGGCTCCTCCTGTCGTAGAGGAAGA
AAATATTTTTGATAACGATAATCCCACAATAGAAGTAGCTTTGTCGTGGC
TTGGCGAGATCCAGATTTATAAATTGCGGCAGCACCAAAAGTTTAAGCAT
CTGTTCAAGGAGTTAGCATCACGCAATGGGATAGATGAGAATGATATAAC
GGTGGATATGTACTATAACTTCGTTGGACCTGAGGATACGCCGCACAGCA
TTGGTCTCAAATCATTTCATACGCTCACTGGCCATCCAACAAAGAGTCAC
AATAATAACAACGTGGCTGCTAAAATTGACTACAATCCAGAAGCTCTTTG
CCGGAAACCTAAGAAGTTTCAAGTTAAAGTACAGGCGGATAAATGGAAGC
ATCCTTTGGTGATACCCATGAAGAAAACTGATAATTTCAAAATCATATTT
ATTAAGTGTGCTGAGGAGTTGAACTGTGATCCCCGAACCATTAAATTGTT
TTTTGACGGTGACTTGTTGGATCCAAATGATACGCCCAATAACCAGGATA
TGGAGGGCAACGAAGTTATAGATCTTAAAATAAAGGCTTAAAAGCTTTCT
AGACCAT

BS28485.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:03:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG4449-RD 1275 CG4449-PD 1..1275 17..1291 6375 100 Plus
CG4449-RA 1275 CG4449-PA 1..1275 17..1291 6375 100 Plus
CG4449-RE 1272 CG4449-PE 1..1272 17..1291 6295 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:03:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG4449-RD 1500 CG4449-RD 77..1352 17..1292 6380 100 Plus
CG4449-RA 1677 CG4449-RA 254..1529 17..1292 6380 100 Plus
CG4449-RE 1497 CG4449-RE 77..1349 17..1292 6300 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:03:42
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23250600..23251104 577..73 2525 100 Minus
3R 32079331 3R 23249741..23249963 1200..978 1115 100 Minus
3R 32079331 3R 23250023..23250202 977..798 900 100 Minus
3R 32079331 3R 23250425..23250540 693..578 580 100 Minus
3R 32079331 3R 23250256..23250363 799..692 540 100 Minus
3R 32079331 3R 23249591..23249682 1292..1201 460 100 Minus
3R 32079331 3R 23251167..23251224 74..17 290 100 Minus
Blast to na_te.dros performed 2014-11-28 05:03:43
Subject Length Description Subject Range Query Range Score Percent Strand
Stalker4 7359 Stalker4 STALKER4 7359bp 1417..1463 744..791 111 72.9 Plus
Stalker 7256 Stalker STALKER 7256bp 1309..1355 744..791 111 72.9 Plus

BS28485.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-08 17:47:59 Download gff for BS28485.complete
Subject Subject Range Query Range Percent Splice Strand
CG4449-RA 254..1526 17..1289 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:35:51 Download gff for BS28485.complete
Subject Subject Range Query Range Percent Splice Strand
CG4449-RA 254..1526 17..1289 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:03:23 Download gff for BS28485.complete
Subject Subject Range Query Range Percent Splice Strand
CG4449-RA 254..1526 17..1289 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:03:23 Download gff for BS28485.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23250023..23250201 799..977 100 <- Minus
3R 23250257..23250363 692..798 100 <- Minus
3R 23250427..23250540 578..691 100 <- Minus
3R 23249741..23249963 978..1200 100 <- Minus
3R 23249594..23249682 1201..1289 100 <- Minus
3R 23250600..23251102 75..577 100 <- Minus
3R 23251167..23251224 17..74 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:35:51 Download gff for BS28485.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19076149..19076262 578..691 100 <- Minus
arm_3R 19075745..19075923 799..977 100 <- Minus
arm_3R 19075979..19076085 692..798 100 <- Minus
arm_3R 19075316..19075404 1201..1289 100 <- Minus
arm_3R 19075463..19075685 978..1200 100 <- Minus
arm_3R 19076322..19076824 75..577 100 <- Minus
arm_3R 19076889..19076946 17..74 100   Minus

BS28485.pep Sequence

Translation from 16 to 1290

> BS28485.pep
MSDDDCDIFSAARKRIPEIALPKNPYNLGNDSFSKEVDYDFIEDLPKKST
KTGKRKNPAATRKNPPKSQDDASPPKQAEHKAVEPEEDMRTERSLSPVSL
LILEMEKKNGQQSDVEKHAKENDVGPVARRTRSSLNRSEMAPPPVSPTVE
VPTQTKPKKRGQKKRTSLTTTTSNSASMEVSLPSIVGQNNEHISRRWTLA
EVAARSKVVDSIDLVSAVAPRVEGFVNLDSEDEGEKEAPPVVEEENIFDN
DNPTIEVALSWLGEIQIYKLRQHQKFKHLFKELASRNGIDENDITVDMYY
NFVGPEDTPHSIGLKSFHTLTGHPTKSHNNNNVAAKIDYNPEALCRKPKK
FQVKVQADKWKHPLVIPMKKTDNFKIIFIKCAEELNCDPRTIKLFFDGDL
LDPNDTPNNQDMEGNEVIDLKIKA*

BS28485.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:52:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG4449-PD 424 CG4449-PD 1..424 1..424 2218 100 Plus
CG4449-PA 424 CG4449-PA 1..424 1..424 2218 100 Plus
CG4449-PE 423 CG4449-PE 1..423 1..424 2201 99.8 Plus
CG4449-PC 422 CG4449-PC 1..422 1..424 2195 99.5 Plus
CG4449-PB 422 CG4449-PB 1..422 1..424 2195 99.5 Plus