BS28501.complete Sequence
707 bp assembled on 2012-03-26
GenBank Submission: KX805993
> BS28501.complete
GAAGTTATCAGTCGACATGTGGAACGTATCCTCGATCCTGGAAGGGCTAG
AGCATGAGCAAGGAGTAAACGCGGACCTCCGCGGCAAGAACGTGTTCAAC
TTGTGCGTGACCTTCTTGTGGATATTTCTGTGCATCTACGTCCTGTCCAA
GCTAACCCAACTCGTGGAGCTCTTTCTGTGCCAGCGGCTACTTGGCCAGA
AGCAATGGTACGACGTCCGCACGATCAAAAACGAGTGGGAGCAGACCCTC
CAGCTTTATGAGGACGATAAAAGCCAGCTGGACGCACAGGTGCGCGAGTT
GCGAGAAAAGAACCTGAGTATGGAGCGCTTGATGGTGGACCTGCGAGACT
ACAACATCCACTTGATCAGCGAAAACTATATGCTGTCCGTGATGCACGAA
CAGAAACCAAGGCCGGCCGAGCCGAACATCTACATCACCAACAGCCACTT
CCATCTCACTCGCCAGATGTTTCTGAACGATAGTCAAATCAATCTGAACG
TCCATGACCATGGCGAGAAAGGAGCTTCCGGGGAGGGCAAAAATGTCTGG
CTGCAGTATCTAAGGATGCGCAAGTGCTATATGAGCCCGATTGCCGATCC
GAATTCGATAGATCCCAGCAGCACCACCAAGCAGATTCTCCCAATTGTTA
TGAGCACCGAGCAGTTGGCCGAATTGCAAGGCATGATCTAGAAGCTTTCT
AGACCAT
BS28501.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:07:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14589-RA | 675 | CG14589-PA | 1..675 | 17..691 | 3375 | 100 | Plus |
| CG14589-RC | 750 | CG14589-PC | 1..662 | 17..678 | 3310 | 100 | Plus |
| CG14589-RB | 561 | CG14589-PB | 266..561 | 396..691 | 1465 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:07:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14589-RA | 882 | CG14589-RA | 125..799 | 17..691 | 3375 | 100 | Plus |
| CG14589-RC | 877 | CG14589-RC | 125..786 | 17..678 | 3310 | 100 | Plus |
| CG14589-RB | 768 | CG14589-RB | 390..685 | 396..691 | 1465 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:07:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 6137427..6137813 | 17..403 | 1935 | 100 | Plus |
| 2R | 25286936 | 2R | 6137986..6138266 | 401..681 | 1405 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 04:07:06 has no hits.
BS28501.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-26 11:13:00 Download gff for
BS28501.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14589-RA | 125..799 | 17..691 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:10:17 Download gff for
BS28501.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14589-RA | 125..799 | 17..691 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:20:05 Download gff for
BS28501.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14589-RA | 125..799 | 17..691 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:20:05 Download gff for
BS28501.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 6137427..6137813 | 17..403 | 100 | -> | Plus |
| 2R | 6137989..6138272 | 404..690 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:10:17 Download gff for
BS28501.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 2024932..2025318 | 17..403 | 100 | -> | Plus |
| arm_2R | 2025494..2025777 | 404..690 | 98 | | Plus |
BS28501.pep Sequence
Translation from 16 to 690
> BS28501.pep
MWNVSSILEGLEHEQGVNADLRGKNVFNLCVTFLWIFLCIYVLSKLTQLV
ELFLCQRLLGQKQWYDVRTIKNEWEQTLQLYEDDKSQLDAQVRELREKNL
SMERLMVDLRDYNIHLISENYMLSVMHEQKPRPAEPNIYITNSHFHLTRQ
MFLNDSQINLNVHDHGEKGASGEGKNVWLQYLRMRKCYMSPIADPNSIDP
SSTTKQILPIVMSTEQLAELQGMI*
BS28501.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:59:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14589-PA | 224 | CG14589-PA | 1..224 | 1..224 | 1180 | 100 | Plus |
| CG14589-PC | 249 | CG14589-PC | 1..224 | 1..224 | 1164 | 98.2 | Plus |
| CG14589-PB | 186 | CG14589-PB | 1..186 | 1..224 | 940 | 83 | Plus |
