BS28505.complete Sequence
626 bp assembled on 2012-03-26
GenBank Submission: KX802618
> BS28505.complete
GAAGTTATCAGTCGACATGGCTTACTTCCAGTTCCTCAGCGTTGCCTCCA
GCTTGCTTCTACTCCTGGCTCCCACCTGGGCAGGTCTGATTGCTCAGCCG
ACCATCACCTATGCTGGCAATGAGCACGCGGTGGCCCACACCCAACAGAA
TGTAGTAAGGAGCTTCGATGGCACCGTCTCCCACTACGCCAAGTCGCTGG
CCACGCCCTACTCGCAGGTCCACAAGCAGGACACGCGGATCAGCAACAAT
GTCTACCAGCCGGCTGTGGCCAAGACCTTCAGTTATGCTACAGCTCCAGC
TCCGGTTTACACGCACCAGGCTCATCAGGAACCAAAAAATCTGTTTACTC
AGGCATCGCCAGTTTACCAGCAGGATGCTCATGTCCAGACTCCATCGGTT
TACCAGCAGGCTGCTCATGTCCAGACTCCATCGGTTTACCATCAGCCCGC
TCAGGTGCAGAGCTACCACCAACCTGGTCATGTGGAGGCACCTTCTGTTT
ACCAACAGAACGCCCACTACAGCCACCAGCCTGCTGTCATCCACTATTCT
CCGGCGGAGACCGTCTCCCACATGAGCTTCGATGGTTTCGGTACCCACTA
CGGATTTTAAAAGCTTTCTAGACCAT
BS28505.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:07:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7548-RA | 594 | CG7548-PA | 1..594 | 17..610 | 2955 | 99.8 | Plus |
| CG7548-RA | 594 | CG7548-PA | 346..409 | 398..461 | 230 | 90.6 | Plus |
| CG7548-RA | 594 | CG7548-PA | 382..445 | 362..425 | 230 | 90.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:07:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7548-RA | 678 | CG7548-RA | 12..610 | 12..610 | 2980 | 99.8 | Plus |
| CG7548-RA | 678 | CG7548-RA | 362..425 | 398..461 | 230 | 90.6 | Plus |
| CG7548-RA | 678 | CG7548-RA | 398..461 | 362..425 | 230 | 90.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:07:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7505608..7506206 | 610..12 | 2980 | 99.8 | Minus |
| 3L | 28110227 | 3L | 7505757..7505820 | 425..362 | 230 | 90.6 | Minus |
| 3L | 28110227 | 3L | 7505793..7505856 | 461..398 | 230 | 90.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 04:07:18 has no hits.
BS28505.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-26 11:13:02 Download gff for
BS28505.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7548-RA | 17..608 | 17..608 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:10:23 Download gff for
BS28505.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7548-RA | 17..608 | 17..608 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:20:10 Download gff for
BS28505.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7548-RA | 17..608 | 17..608 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:20:10 Download gff for
BS28505.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7505610..7506201 | 17..608 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:10:23 Download gff for
BS28505.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7498710..7499301 | 17..608 | 99 | | Minus |
BS28505.pep Sequence
Translation from 16 to 609
> BS28505.pep
MAYFQFLSVASSLLLLLAPTWAGLIAQPTITYAGNEHAVAHTQQNVVRSF
DGTVSHYAKSLATPYSQVHKQDTRISNNVYQPAVAKTFSYATAPAPVYTH
QAHQEPKNLFTQASPVYQQDAHVQTPSVYQQAAHVQTPSVYHQPAQVQSY
HQPGHVEAPSVYQQNAHYSHQPAVIHYSPAETVSHMSFDGFGTHYGF*
BS28505.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:00:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7548-PA | 197 | CG7548-PA | 1..197 | 1..197 | 1049 | 100 | Plus |
| CG8543-PA | 219 | CG8543-PA | 8..219 | 1..197 | 320 | 39.7 | Plus |
| CG8541-PA | 275 | CG8541-PA | 8..275 | 12..197 | 303 | 34.8 | Plus |
