Clone BS28506 Report

Search the DGRC for BS28506

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:285
Well:6
Vector:pDNR-Dual
Associated Gene/TranscriptCG43054-RA
Protein status:BS28506.pep: full length peptide match
Sequenced Size:443

Clone Sequence Records

BS28506.complete Sequence

443 bp assembled on 2012-03-26

GenBank Submission: KX801863

> BS28506.complete
GAAGTTATCAGTCGACATGAATTGGTTCAATAATATATGCGAGGAAAGTC
GCTTAAAGTTTTTTCCCAATCTTCAAACAGTCAAAGCTAAGCGTAAATAC
GAAATTGGCCTGATGAGCGCAGATGAGTGCTATAGTTTCATAAAGAAAAA
CCTGAAGTCCAGAAATGTTGTAGAAGAAGAAATGTTGTGGAAAGTCCCCA
TAATTCTTGTGTGTATCGGCTGCATAATAGTCATACTATTTGCATTTTGT
TTCGCATTTCAGTGTGTGATAACAAAGGTAAAGACCGCCAAAGTGCCAAA
GCGTTTCGATTTCGACATTTGTGAAGCTGAAAAACCAAAAGCCCAACCAA
TCCACAAGGCCAGCCAAATTGATCACCCAAAGAAAGGAACAAATTGCTGT
ACTTGTTTAAAATCAAATCTACTTTGAAAGCTTTCTAGACCAT

BS28506.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:07:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG43054-RA 411 CG43054-PA 1..411 17..427 2055 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:07:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG43054-RA 531 CG43054-RA 39..454 13..428 2065 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:07:21
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 17627897..17628312 13..428 2065 99.8 Plus
Blast to na_te.dros performed on 2014-11-28 04:07:21 has no hits.

BS28506.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-26 11:13:02 Download gff for BS28506.complete
Subject Subject Range Query Range Percent Splice Strand
CG43054-RA 43..452 17..426 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:10:25 Download gff for BS28506.complete
Subject Subject Range Query Range Percent Splice Strand
CG43054-RA 43..452 17..426 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:20:11 Download gff for BS28506.complete
Subject Subject Range Query Range Percent Splice Strand
CG43054-RA 43..452 17..426 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:20:11 Download gff for BS28506.complete
Subject Subject Range Query Range Percent Splice Strand
2L 17627901..17628310 17..426 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:10:25 Download gff for BS28506.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 17627901..17628310 17..426 100   Plus

BS28506.pep Sequence

Translation from 16 to 426

> BS28506.pep
MNWFNNICEESRLKFFPNLQTVKAKRKYEIGLMSADECYSFIKKNLKSRN
VVEEEMLWKVPIILVCIGCIIVILFAFCFAFQCVITKVKTAKVPKRFDFD
ICEAEKPKAQPIHKASQIDHPKKGTNCCTCLKSNLL*

BS28506.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:00:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG43054-PA 136 CG43054-PA 1..136 1..136 733 100 Plus