Clone BS28511 Report

Search the DGRC for BS28511

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:285
Well:11
Vector:pDNR-Dual
Associated Gene/TranscriptCG42830-RA
Protein status:BS28511.pep: full length peptide match
Sequenced Size:596

Clone Sequence Records

BS28511.complete Sequence

596 bp assembled on 2012-03-26

GenBank Submission: KX806489

> BS28511.complete
GAAGTTATCAGTCGACATGAGTCACATAACTCGAAAGCGTTTACTAACTT
TGGATGAGGAATCTCAGCATATCAATTCGACAAAACGATGTGGGAGCAAC
TGCATCGAGAAGATGTTAACAAAATGGTCCCGCCAAAGTATTCCAGGCGT
CAATAGCATTTCGCGGAAGCGATCGTTTCCTTGGGAGGATAACTCGCCTG
ATATATTTCCCGCAAAACATTCACGAAAGCATATCATAAAAAAGAAGTCG
AAAACAATTCACGAGCCAGAGGTCCCGATAGATTTTTTGATGGGACTGCC
AGTATTGCTTGATAGTGACTTTAGTGATTCGGAGGAATGTCGCCCAAAAT
CAGAGATTCATGTGGCCAAACCAGAAACTGAAGATAACCGAGATTTGTTT
ACCTATCAGCAATTGAAATTAATGTGCTGCGAAATGATGAAACAATGCGA
AGATCGGGTAGTACTGGAATATGAAATAGCATTGACTCAAAAAATGGCAG
AGCAGTATGATACATTCATCAAGTTCAACCACGACCAATTGCAGCGAGAA
TGTGAACATAGGGCTAGTTATTTGTCTTAGAAGCTTTCTAGACCAT

BS28511.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:07:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG42830-RA 564 CG42830-PA 1..564 17..580 2820 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:07:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG42830-RA 720 CG42830-RA 67..633 15..581 2835 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:06:58
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 17812040..17812606 581..15 2835 100 Minus
Blast to na_te.dros performed on 2014-11-28 04:06:59 has no hits.

BS28511.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-26 11:12:58 Download gff for BS28511.complete
Subject Subject Range Query Range Percent Splice Strand
CG42830-RA 1..564 17..580 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:10:13 Download gff for BS28511.complete
Subject Subject Range Query Range Percent Splice Strand
CG42830-RA 69..632 17..580 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:20:01 Download gff for BS28511.complete
Subject Subject Range Query Range Percent Splice Strand
CG42830-RA 69..632 17..580 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:20:01 Download gff for BS28511.complete
Subject Subject Range Query Range Percent Splice Strand
2L 17812041..17812604 17..580 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:10:13 Download gff for BS28511.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 17812041..17812604 17..580 100   Minus

BS28511.pep Sequence

Translation from 16 to 579

> BS28511.pep
MSHITRKRLLTLDEESQHINSTKRCGSNCIEKMLTKWSRQSIPGVNSISR
KRSFPWEDNSPDIFPAKHSRKHIIKKKSKTIHEPEVPIDFLMGLPVLLDS
DFSDSEECRPKSEIHVAKPETEDNRDLFTYQQLKLMCCEMMKQCEDRVVL
EYEIALTQKMAEQYDTFIKFNHDQLQRECEHRASYLS*

BS28511.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:59:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG42830-PA 187 CG42830-PA 1..187 1..187 996 100 Plus
akirin-PF 201 CG8580-PF 1..201 1..187 169 29.1 Plus
akirin-PE 201 CG8580-PE 1..201 1..187 169 29.1 Plus
akirin-PD 201 CG8580-PD 1..201 1..187 169 29.1 Plus
akirin-PC 201 CG8580-PC 1..201 1..187 169 29.1 Plus