Clone BS28518 Report

Search the DGRC for BS28518

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:285
Well:18
Vector:pDNR-Dual
Associated Gene/TranscriptCG14417-RA
Protein status:BS28518.pep: gold
Sequenced Size:1025

Clone Sequence Records

BS28518.complete Sequence

1025 bp assembled on 2012-03-26

GenBank Submission: KX801841

> BS28518.complete
GAAGTTATCAGTCGACATGCAGCCACCACCGAAGACATACAACTGGTTGC
TCCTCTTGCTTGTCCTTTTGGGCATTAGCCTGGCCAGGACAGCGCCGCGT
CAGGCGACAAGTACCTACGTCATTCCGATGTCTTGGAACGATCTGATTGG
GACGTTCAATTTCCCAGAGCCGCAGGAAAAATCCCATGAAATTCCCGAGC
CGCGTGCGTTCTCTGTGAGTCTGGATGATATGAGTCCCGATGGACAGCAG
GCGGATGATCTGCAGCAGGTGCTCATGCTGACCAGTGGACTGACTCCCGC
CCAGATTGCCCAGCGCAGTCAGGGCCGGAACAATGAGGGTAGATTCTTTG
GACGCGGCGGTACCACCGTGGTGGTGATCACCGGTGGTGGCGCTGCCAAC
AACACTAACAACAACAGTTTTGTGAGCACTCCTGCAAGCACAACCACAAC
GGGCACTCGAACCTCGGAGTTTATCCGTACACCAATTGCATACCCGGCCG
GATTGCCCATGCAGTACTTCCGAAAGCGGCAGGATGACGGAACATCGATG
TCATATCCGGAATTCCTCCGCTGGAACGAGGCAGCTTTCTATGGCGGAGA
TTTGGGTTTGAGCGGCTCCAATGGGGCCTATGGTCTGTCGGGCGTCCCTT
TGGTACCCATCACCGTTGGCAACGAGGTGAGGTATGTGCCAATGAATCTT
CGCATGTTCCGGCAGCTTGTCGGTGATCCCACTACGGTTGCTTCCCCACC
ACCGCCGTCCATCAGGGAGCAGGATGATCAGCTGGAGGACGACGACATAT
CCGCCTTGTCCTTGGGCCCCGAACTGGAAGTACTCGACGAGAGCCCCAAT
GAAGGAGGCCAAGAGGTCGCAGGTTCTGGTCACTCGGTCGCCGATTCACC
AGGCTTTGGAATCCTTGGCCAGCGGCTGAGACAACGACCATTGGTCAGGA
GGCGACCACTGCAGACACTGGCCCAGAATATTCGCCGGGTGCAGTACGTC
AGAAAGTAAAAGCTTTCTAGACCAT

BS28518.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:07:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG14417-RA 993 CG14417-PA 1..993 17..1009 4965 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:07:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG14417-RA 1106 CG14417-RA 11..1003 17..1009 4965 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:07:44
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2875531..2876523 1009..17 4965 100 Minus
Blast to na_te.dros performed on 2014-11-28 04:07:45 has no hits.

BS28518.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-26 11:13:07 Download gff for BS28518.complete
Subject Subject Range Query Range Percent Splice Strand
CG14417-RA 1..991 17..1007 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:10:38 Download gff for BS28518.complete
Subject Subject Range Query Range Percent Splice Strand
CG14417-RA 11..1001 17..1007 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:20:24 Download gff for BS28518.complete
Subject Subject Range Query Range Percent Splice Strand
CG14417-RA 11..1001 17..1007 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:20:24 Download gff for BS28518.complete
Subject Subject Range Query Range Percent Splice Strand
X 2875533..2876523 17..1007 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:10:38 Download gff for BS28518.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 2769566..2770556 17..1007 100   Minus

BS28518.pep Sequence

Translation from 16 to 1008

> BS28518.pep
MQPPPKTYNWLLLLLVLLGISLARTAPRQATSTYVIPMSWNDLIGTFNFP
EPQEKSHEIPEPRAFSVSLDDMSPDGQQADDLQQVLMLTSGLTPAQIAQR
SQGRNNEGRFFGRGGTTVVVITGGGAANNTNNNSFVSTPASTTTTGTRTS
EFIRTPIAYPAGLPMQYFRKRQDDGTSMSYPEFLRWNEAAFYGGDLGLSG
SNGAYGLSGVPLVPITVGNEVRYVPMNLRMFRQLVGDPTTVASPPPPSIR
EQDDQLEDDDISALSLGPELEVLDESPNEGGQEVAGSGHSVADSPGFGIL
GQRLRQRPLVRRRPLQTLAQNIRRVQYVRK*

BS28518.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:00:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG14417-PA 330 CG14417-PA 1..330 1..330 1715 100 Plus