BS28519.complete Sequence
923 bp assembled on 2012-03-26
GenBank Submission: KX806176
> BS28519.complete
GAAGTTATCAGTCGACATGTGTTTCTTTGGCCTTGTTTCGCAGTTCCTGT
TCTTCGTTTACGGCACCATGGGACCGGCCTGGCAAACCTATAAGACTCTG
AACAGCGGAGACGAGGAGTTCCTGGCCTGGGCCAAATACTGGATAGTTTA
CGCCTTCCTGGTCACCTTCGAGGTGCTGGCGGACGTCTTCCTCTCCTGGC
TGCCGCTCTACATGCCCACCAAGTTGCTCCTGGTCGTGTGGATCGTGCTG
TCCGCTCCGGCCGCCAATGTCTGGATATTCGACGCCATCCTGCGTCCGGT
GCTGGCAAAGCGGCAGGAGGAGATCGATCACTTCCTGCACCGGGGCAAGG
AGAAGCTCCTGATCGACGCCCTCGCTTCGATGACACAGCTGGTGGCACAG
ACCCAAATCTCTGTACTGCCTTTCGTGTCCAGCTTCTGGTCGAGATCGAG
CACTGCTCCCCTTAGGACTTCCGATCTGTTGCAGGACTCCACTGGAGAAG
GAATTGGAGGCAGAACTTCCGAGGATACTGACTCGGCCAACGTCTCTGTC
CAAAATCTGTCCAGTGGTTCCAGTCCCGTTGGCAGCTTAGAGCACCTCCG
TGACGACTCTGAGGAGCTTCTGGTGGGCGTTTCGAAGGCCACCACGCACC
TGCAGGCGGAGCAGTTCCAGAGCGACGTGTCGTCGGAATCACCCAGGATA
ATTAATCGCCGACCTCAGCGCAAGTTCAAGAATGCCATTGCTATTGCCTC
CGCCACCAAGCTGGAGGACCTCCATGACGATGTGGAGGATCTGCTGGCCA
AGACGGCGATGGAGACCAGCGGCCAGGAAGTGCGTCAGCAGCGTCAACCG
GCCAGCCGTCGCCGTCTTTTAGCACAATCATTTGTGAAACCTCAAACAGG
TTTATAGAAGCTTTCTAGACCAT
BS28519.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:07:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5539-RB | 891 | CG5539-PB | 1..891 | 17..907 | 4455 | 100 | Plus |
| CG5539-RA | 891 | CG5539-PA | 1..891 | 17..907 | 4455 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:07:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5539-RB | 1334 | CG5539-RB | 129..1019 | 17..907 | 4455 | 100 | Plus |
| CG5539-RA | 1078 | CG5539-RA | 129..1019 | 17..907 | 4455 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:07:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23804939..23805829 | 17..907 | 4455 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 04:07:49 has no hits.
BS28519.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-26 11:13:08 Download gff for
BS28519.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5539-RA | 129..1019 | 17..907 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:10:40 Download gff for
BS28519.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5539-RA | 129..1019 | 17..907 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:20:25 Download gff for
BS28519.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5539-RA | 129..1019 | 17..907 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:20:25 Download gff for
BS28519.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23804939..23805829 | 17..907 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:10:40 Download gff for
BS28519.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19692462..19693352 | 17..907 | 100 | | Plus |
BS28519.pep Sequence
Translation from 16 to 906
> BS28519.pep
MCFFGLVSQFLFFVYGTMGPAWQTYKTLNSGDEEFLAWAKYWIVYAFLVT
FEVLADVFLSWLPLYMPTKLLLVVWIVLSAPAANVWIFDAILRPVLAKRQ
EEIDHFLHRGKEKLLIDALASMTQLVAQTQISVLPFVSSFWSRSSTAPLR
TSDLLQDSTGEGIGGRTSEDTDSANVSVQNLSSGSSPVGSLEHLRDDSEE
LLVGVSKATTHLQAEQFQSDVSSESPRIINRRPQRKFKNAIAIASATKLE
DLHDDVEDLLAKTAMETSGQEVRQQRQPASRRRLLAQSFVKPQTGL*
BS28519.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:00:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5539-PB | 296 | CG5539-PB | 1..296 | 1..296 | 1499 | 100 | Plus |
| CG5539-PA | 296 | CG5539-PA | 1..296 | 1..296 | 1499 | 100 | Plus |
| CG42678-PG | 288 | CG30193-PG | 5..279 | 6..278 | 233 | 24.3 | Plus |
| CG42678-PE | 288 | CG30193-PE | 5..279 | 6..278 | 233 | 24.3 | Plus |
| CG42678-PD | 435 | CG30193-PD | 162..426 | 16..278 | 226 | 24.5 | Plus |
