Clone BS28522 Report

Search the DGRC for BS28522

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:285
Well:22
Vector:pDNR-Dual
Associated Gene/Transcriptkune-RA
Protein status:BS28522.pep: full length peptide match
Sequenced Size:827

Clone Sequence Records

BS28522.complete Sequence

827 bp assembled on 2012-03-26

GenBank Submission: KX804990

> BS28522.complete
GAAGTTATCAGTCGACATGGGTGCGTCCAACCGCATTTTACAAGTTGCCC
TTTGCGCGTCCGTGTTTTCCCTAATATGTTTTGTTATCGCGTTTTCCACG
CCTTATTGGCTGGTTACAGACGGCAGATTACAAAACCCGCGATTCACTAA
CCTAGGCCTTTGGGAAGTTTGTTTCAACAACTTCCAGGACATACACCGAT
TTTTTGACAATTCCTTTAACGGATGCCTATGGGTTTTCGAAGAGGAATAT
TACATCATACACGACTTCCTCCTGCCTGGCTTCTACATATCCGTTCAACT
TTTTGCTACGCTATGCTTTGTAATGTGCCTTGTTGTTATACCACTCACTG
TAGCATTTCTTCGCACTTCTCGCGATGATGACAGGTACATGGTGCTCCTG
CTGGCGATAGGATCATGCCAGGTTGTGGGCTCTGTTTTCGGGTTTATTGC
TGTGGTCATTTTTGGCGCCAAAGGAGATTCTCGGGATTGGATGCCAGGAT
GGCAGAACAATGATATGGGCTGGTCATTTGCTCTGGGCGTTGTTGGCGCT
GTGCTGCTACTGCCGTCTGGCGTACTCTATCTAGTAGAAGCGCGTCGGGA
AAGGTACAAGCGCTTAAACGAAATCAGCAATCGGGAGATCAGTGAATACG
GAGATGAGTATTACCAGAATCAGGGACCCTCCGCAGTGCTTCCGACCGCT
CCATCGCCATATCAATCCTATTTTGCATCTGAGCCAAGCCGACCAAGAAG
ACCCCAACAAAGTAGTGCATCGAATTCCGCTGTACAAGGAGGAATTCAAA
CAGATATATAAAAGCTTTCTAGACCAT

BS28522.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:07:32
Subject Length Description Subject Range Query Range Score Percent Strand
kune-RA 795 CG1298-PA 1..795 17..811 3975 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:07:33
Subject Length Description Subject Range Query Range Score Percent Strand
kune-RA 1060 CG1298-RA 95..890 17..812 3980 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:07:31
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 5671835..5672630 17..812 3980 100 Plus
Blast to na_te.dros performed on 2014-11-28 04:07:32 has no hits.

BS28522.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-26 11:13:04 Download gff for BS28522.complete
Subject Subject Range Query Range Percent Splice Strand
kune-RA 64..856 17..809 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:10:31 Download gff for BS28522.complete
Subject Subject Range Query Range Percent Splice Strand
kune-RA 95..887 17..809 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:20:17 Download gff for BS28522.complete
Subject Subject Range Query Range Percent Splice Strand
kune-RA 95..887 17..809 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:20:17 Download gff for BS28522.complete
Subject Subject Range Query Range Percent Splice Strand
2R 5671835..5672627 17..809 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:10:31 Download gff for BS28522.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 1559340..1560132 17..809 100   Plus

BS28522.pep Sequence

Translation from 16 to 810

> BS28522.pep
MGASNRILQVALCASVFSLICFVIAFSTPYWLVTDGRLQNPRFTNLGLWE
VCFNNFQDIHRFFDNSFNGCLWVFEEEYYIIHDFLLPGFYISVQLFATLC
FVMCLVVIPLTVAFLRTSRDDDRYMVLLLAIGSCQVVGSVFGFIAVVIFG
AKGDSRDWMPGWQNNDMGWSFALGVVGAVLLLPSGVLYLVEARRERYKRL
NEISNREISEYGDEYYQNQGPSAVLPTAPSPYQSYFASEPSRPRRPQQSS
ASNSAVQGGIQTDI*

BS28522.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:00:22
Subject Length Description Subject Range Query Range Score Percent Strand
kune-PA 264 CG1298-PA 1..264 1..264 1399 100 Plus
sinu-PA 247 CG10624-PA 44..233 16..200 312 38.9 Plus
pck-PC 256 CG14779-PC 39..238 18..212 264 33 Plus
pck-PA 256 CG14779-PA 39..238 18..212 264 33 Plus