BS28524.complete Sequence
917 bp assembled on 2012-03-26
GenBank Submission: KX805371
> BS28524.complete
GAAGTTATCAGTCGACATGGCTGCCACCGATATCGCCGAGGAGGCCTTTC
ACTTGCGCCTGGGCTATCTGAAGCCGGAGACCGTGGAAATCGCCCGTGTG
GAACTCCGCGAAACCGAAGAAGTCAAGGCGGAGGCCATCATCAAGCTACG
GGAACTGCTCAAGGCCACGCCCGAGCTGAACTACAAGGATGACGACGCTT
TCCTCACAGTTTTCCTGCGCGCCTGCCACTTTTATCCCGAAGGAGCTCTG
GAAAAGATGAAAACCACAGCCAGCTTCCGCAAGGAGTACGCCTCTCTGGT
CCGCGGACTCCTGGTCGAGCAGGTTAAGGAGAAATTCGTGAAGGGCAGTG
TGATCAATGTGCTCAAGAACTGCGACCAGAAGGGTCGTCGTGTGCTCATC
GTGAACTGTGGCAAACTCTGGGATCCCAGCGATATTACCAGCGATGAGAT
GTTCCGCATGCTCTACATGGTACATCTCGCCGCCCAGCTGGAGGAGGAGA
CCCAGGTGCGGGGCGTGGTCTGCATCATGGACTTCGAGGGACTGTCGATG
AAACAGGTGAAGGCCCTGTCGCCGAGCTTCTCCAAGCGATTGCTCACATT
CATCCAGGAGGCGATGCCCCTTCGCATGAAGGAGGTGCACTTCGTGAAGC
AGCCGTTCATCTTCAACATGGTTTGGTCGCTCTTCAAGCCCTTCGTCAAA
CAAAAGCTGAACAATAGGATGCACTTCCACGGCAGTGACATGAAGTCGTT
GCAGAAGTTCCTCGACCCCTCCGTCCTGCCCGCCAACTACAAGGGTACTC
TGCCCGCGATCGACTACGGTGGCGTCGAGTGGTTCCCCGCTCTGGAGCAG
CAGGCCCAGTATGTGGAGGAGTGGAGCCAGCTTGGCCCTGCCCAGTGGTG
AAAGCTTTCTAGACCAT
BS28524.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:11:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5958-RA | 885 | CG5958-PA | 1..885 | 17..901 | 4425 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:11:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5958-RA | 1174 | CG5958-RA | 147..1031 | 17..901 | 4425 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:10:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7431079..7431542 | 718..255 | 2320 | 100 | Minus |
| 2L | 23513712 | 2L | 7432937..7433176 | 256..17 | 1200 | 100 | Minus |
| 2L | 23513712 | 2L | 7430673..7430856 | 901..718 | 920 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 04:10:59 has no hits.
BS28524.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-26 11:13:41 Download gff for
BS28524.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5958-RA | 111..994 | 17..900 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:12:19 Download gff for
BS28524.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5958-RA | 147..1030 | 17..900 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:21:47 Download gff for
BS28524.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5958-RA | 147..1030 | 17..900 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:21:47 Download gff for
BS28524.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7430674..7430855 | 719..900 | 100 | <- | Minus |
| 2L | 7431079..7431540 | 257..718 | 100 | <- | Minus |
| 2L | 7432937..7433176 | 17..256 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:12:19 Download gff for
BS28524.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7430674..7430855 | 719..900 | 100 | <- | Minus |
| arm_2L | 7431079..7431540 | 257..718 | 100 | <- | Minus |
| arm_2L | 7432937..7433176 | 17..256 | 100 | | Minus |
BS28524.pep Sequence
Translation from 16 to 900
> BS28524.pep
MAATDIAEEAFHLRLGYLKPETVEIARVELRETEEVKAEAIIKLRELLKA
TPELNYKDDDAFLTVFLRACHFYPEGALEKMKTTASFRKEYASLVRGLLV
EQVKEKFVKGSVINVLKNCDQKGRRVLIVNCGKLWDPSDITSDEMFRMLY
MVHLAAQLEEETQVRGVVCIMDFEGLSMKQVKALSPSFSKRLLTFIQEAM
PLRMKEVHFVKQPFIFNMVWSLFKPFVKQKLNNRMHFHGSDMKSLQKFLD
PSVLPANYKGTLPAIDYGGVEWFPALEQQAQYVEEWSQLGPAQW*
BS28524.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:04:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5958-PA | 294 | CG5958-PA | 1..294 | 1..294 | 1523 | 100 | Plus |
| CG10237-PD | 301 | CG10237-PD | 13..283 | 6..276 | 489 | 38.2 | Plus |
| CG10237-PA | 301 | CG10237-PA | 13..283 | 6..276 | 489 | 38.2 | Plus |
| CG10237-PE | 306 | CG10237-PE | 18..288 | 6..276 | 489 | 38.2 | Plus |
| CG10237-PC | 306 | CG10237-PC | 18..288 | 6..276 | 489 | 38.2 | Plus |
