Clone BS28528 Report

Search the DGRC for BS28528

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:285
Well:28
Vector:pDNR-Dual
Associated Gene/TranscriptCG13170-RA
Protein status:BS28528.pep: gold
Sequenced Size:386

Clone Sequence Records

BS28528.complete Sequence

386 bp assembled on 2012-03-26

GenBank Submission: KX802496

> BS28528.complete
GAAGTTATCAGTCGACATGAAGAGCCTTCTGAGTCTGTCGACAGTCCTGT
TTGTCCTGTCATTCGCGTGTGTGGTCCTGGCCAACAGCAGTAGCAGCAGT
TCCACACCCAAGTTATGTGTCCTGCGGAACTGCAACTGGAACTCCACCAC
GAATGCCTGTGGCCGCTTTGGTCGCTCCAATCTGTGCAATCGCTTTAAGA
ACAGCTGCACCCTGCGATATGAATCCTGCGTGGGATCCACCACATACACG
GCGGTCAGTCTGTCCCAGTGTTCCGGGATCAGCGTGGGTTCCCGTGGAAC
CTGCGGAGGATCGTCGTCGTCCTCCTCCTCGTCATCGAATGTTGTACCCA
TAATCATACGCAGGGGATGAAAGCTTTCTAGACCAT

BS28528.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:08:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG13170-RA 354 CG13170-PA 1..354 17..370 1770 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:08:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG13170-RA 415 CG13170-RA 11..364 17..370 1770 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:08:06
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12240409..12240762 17..370 1770 100 Plus
Blast to na_te.dros performed 2014-11-28 04:08:07
Subject Length Description Subject Range Query Range Score Percent Strand
GATE 8507 GATE DME010298 8507bp Derived from AJ010298 (e1315889) (Rel. 56, Last updated, Version 1). 7878..7927 333..286 119 74 Minus

BS28528.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-26 11:13:11 Download gff for BS28528.complete
Subject Subject Range Query Range Percent Splice Strand
CG13170-RA 1..353 17..369 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:10:48 Download gff for BS28528.complete
Subject Subject Range Query Range Percent Splice Strand
CG13170-RA 11..363 17..369 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:20:33 Download gff for BS28528.complete
Subject Subject Range Query Range Percent Splice Strand
CG13170-RA 11..363 17..369 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:20:33 Download gff for BS28528.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12240409..12240761 17..369 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:10:48 Download gff for BS28528.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8127914..8128266 17..369 100   Plus

BS28528.pep Sequence

Translation from 16 to 369

> BS28528.pep
MKSLLSLSTVLFVLSFACVVLANSSSSSSTPKLCVLRNCNWNSTTNACGR
FGRSNLCNRFKNSCTLRYESCVGSTTYTAVSLSQCSGISVGSRGTCGGSS
SSSSSSSNVVPIIIRRG*

BS28528.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:01:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG13170-PA 117 CG13170-PA 1..117 1..117 599 100 Plus
CG43316-PA 191 CG13169-PA 71..191 22..117 168 35.5 Plus
CG43315-PB 102 CG43315-PB 1..102 1..101 158 33.7 Plus
CG43315-PA 120 CG13169-PA 38..120 20..101 137 34.1 Plus