Clone BS28529 Report

Search the DGRC for BS28529

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:285
Well:29
Vector:pDNR-Dual
Associated Gene/TranscriptCG42729-RA
Protein status:BS28529.pep: full length peptide match
Sequenced Size:590

Clone Sequence Records

BS28529.complete Sequence

590 bp assembled on 2012-03-26

GenBank Submission: KX802519

> BS28529.complete
GAAGTTATCAGTCGACATGTGGCAATTGTTGATAGTCTTGGCCTGCCTGT
TACCTGGCTACCTCTGGGTGCAGGTGCAGGCGGTTTTTCTCGAGGAATGC
AAAGGTGTGATCATCAATAAGGTGACCAATGAGAATCAGGAGTGCAGTGA
GTTTGTTCACTGCGATGGCGATGATTCCTACTACTGCAATGGGGATTGTC
GTGAGGCCGTGGAGTGTTATACCAATGTGGTTACCACACCGGTTACCACA
TTAAGACCCATAGGAACCTCTACGGAACGAGCACCATCCGCAGAGCCAGT
CAATACTACATCTACGACTTTAGCTACTACCACGCCAACAACGATTGCTG
TAACCACGACTACAAGCCAAGTTCCGAGCACCGATGTCTATGTCATCTGC
AAGACGAGTGGAAGGAACGGGGTCTATCCCTATCCGGCAAATAGCAATTA
CTATTATCAGTGTATTTCCGGTTATCTGTTGCTCCAGCAGTGCCCACAGA
ATTTCCATTTCGATGTCGCCCAGGGACAGTGCGTTGCCACAAAACCCAAT
CGTTCATCGGGCTTACGTTTGTAAAAGCTTTCTAGACCAT

BS28529.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:11:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG42729-RA 558 CG42729-PA 1..558 17..574 2790 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:11:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG42729-RA 607 CG42729-RA 9..566 17..574 2790 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:11:06
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15526951..15527508 574..17 2790 100 Minus
Blast to na_te.dros performed on 2014-11-28 04:11:06 has no hits.

BS28529.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-26 11:13:43 Download gff for BS28529.complete
Subject Subject Range Query Range Percent Splice Strand
CG42729-RA 1..556 17..572 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:12:23 Download gff for BS28529.complete
Subject Subject Range Query Range Percent Splice Strand
CG42729-RA 9..564 17..572 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:21:49 Download gff for BS28529.complete
Subject Subject Range Query Range Percent Splice Strand
CG42729-RA 9..564 17..572 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:21:49 Download gff for BS28529.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15526953..15527508 17..572 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:12:23 Download gff for BS28529.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15520053..15520608 17..572 100   Minus

BS28529.pep Sequence

Translation from 16 to 573

> BS28529.pep
MWQLLIVLACLLPGYLWVQVQAVFLEECKGVIINKVTNENQECSEFVHCD
GDDSYYCNGDCREAVECYTNVVTTPVTTLRPIGTSTERAPSAEPVNTTST
TLATTTPTTIAVTTTTSQVPSTDVYVICKTSGRNGVYPYPANSNYYYQCI
SGYLLLQQCPQNFHFDVAQGQCVATKPNRSSGLRL*

BS28529.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:05:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG42729-PA 185 CG42729-PA 1..185 1..185 1000 100 Plus
CG42728-PA 156 CG42728-PA 10..152 4..172 163 28.2 Plus
CG33263-PA 227 CG33263-PA 12..214 11..172 159 23.7 Plus