BS28531.complete Sequence
2813 bp assembled on 2012-04-06
GenBank Submission: KX802843
> BS28531.complete
GAAGTTATCAGTCGACATGTTGGCACAGGAGATTTCACCTACGGAAATCG
GCAAACACGCAAACATTATAAGAGCTGCACAGGAGGAATTGGCAAACATG
GACGTTCTTGTATGTGGACGATGTCTCCGGGCCTACAACTTCGTGGAAGA
GTTTCAGGCCCACAAAGAGGACGCCTGCGAAAAGGAAAATGCAAATTTGA
AGGAATCGCTCGATCCCAAGCCCACCATCTGGGCTTTTACGCTATGGAAA
GCTACTCAGCTGCACTCGCGCAAGGACGCGTCCGGCAGCTCGTGGGCCTT
GTACCAGCATTGGGTAAAACTAGACGATAGCGTCCGCGAGCCGTGGATTG
TGGCTGGGAAGACCATACAGTCATTCGGCAAAATTGCACACGGACAACTC
CAGGACATGCCTGTGCGAATAACAAAGACTGTGGTCAATCCAAACAATAA
CAACACATCAAATAGCAACAACAACAACACGAGCGTCTCCCCTACCAGAA
AATCACCAACCGGTAAGCTGCCTACGTTAGCCAATCAACTAAAGGATACA
GAAAACGAAAGACCCAAGTCCAAGCCGAGTACACCAACGCCTTCCTCAGT
TCCCTCTGCCGGAGCCGTGAAGCCGAACAACCGCATAGCCATTAGGATCG
ATTCCAAGACAGATCAGCGCACCGAAGAGCCAGTGGAAAAGATTGTCGCT
AAGCGCTTCAATCCGCGCCGTAAGACCCACGAGTATTTGGTTAAGTGGGT
TGATCGCTCGCATCATGAAAACACCTGGGAGGTGATGGCCAATCTCGAGC
GTGTGCCATACTTTTTGCAGATGTTCGAAAAGCAATTGGCACGCCAAAAA
CTTACTAGGGAGAAGGGTCTGGATGCTCTGAAGCGCATGCAGTCATCAGG
GACAAACGCAAAGTCAGATACTGCCGCCCCACACAGCCCACTTCCGGCGT
CGTCGCAGGTATCGCCGTCTTCTCGGCCATCTCGAACTTCCAAGACCAAG
GCTATGGATGCCTTTAAGCAGTGGGTCAATGAAACCGTTGCCGGAGATGG
ATCCTCCTCGCCTTCCTCGGCAAACGAAGATGAATCCTCCACGGAACAGG
AATGGCCACCATCTTCTGGAGCGATCAAGCGAAAGCTGAACAATACAGAC
TCAAGTTTAGAGGGGAGCGGGTTAAACGACTCGATGGACCTAGAGGACCT
TGAAGAGGATCTTCCGTCCCATACCGTGAAGCGTCTAAAAAACGGAGGAA
GCTCCGTGCAGTTGAACAAGCCACGGATTCAGTCCACGGAAAAGCAGCAG
ACTAAAATTAACGGCAATTCCACCGTGGTATCGCCCCTAACGGAACAAAA
AATGGGTGAAATCATCTATACTGAGGATAGCACGAGCTCCGGCATGTTTC
GCAAGCCCGAGATGCCAAACACAATAAATTTGAAAAAGGAGAAACCAGAG
TGTCCCGTGCGGTATCTTTCGCGCTCCGAGGTGGGCAGCAGCACAAGAGG
CGTTTTTCGGGTTGAAAATTCCGAGGCACCGGCACCCGTTTCGCCTGCAC
CCGTTCCGCAAAAAGTGATCGCTGCGCCGCCCGCCGCAGGCATAGCCAAG
CGTTTGCCAATGGCTCGTCCTGCGCATTCGGGCGCTAACTCGCCCATCAC
TGTGGGCCAGCGACAACACGCGCTTCGAACTCCCGGCCACGGCCCTGTAA
CAGCAGCACTTCATCGCCGTCCTGGAGTGGGTGGTGCATCCCATGTGCGT
CAAAACTTGCAGCAGGCGCCCGGCCGGGCTCACCCGGGTGGTCGAGTCCT
TGCACGAGCCGGTGTCGGAACTCCGCAACATCGCCAACAAGTACAAACTC
CTCAGGGTGCCAAGGCAGTTACGCCAGAGCAAAAGATTTTACAGCTGTCA
AAGTCAGGGGACTTGAAAGTTACGCGTAAAGTAGTGACCCGGGAAGAGTT
GTTGGCTCAGCGCTCTGCCCAGGCACGCCAGCGACAGGCTCTGTCTCAGC
AGCAGTCCAGTCAACAACAGAAAGCGACTCCTGCCCGGCAAAGAATAGTT
TCCAAGTCAACAATCCAGCCAACGCCCCTGCAAATGGAATTGGAGGAGGA
GATTCATCAGCACCAAGCTCAGTTGTGTCCAATCACCGGCAAGCTTATTG
GTCAGGAGGAGACCCAACTGCAAATGGAGCAGGAGCAACAGCAGGAGCAA
CAACGAGAGCAGCTAGAAGCCGCGGCACAGGCCCTTCTGGGCAGCGATCA
ACAAGTTCTTACCAACGAGGACGGCTCGGCCTTGCTGGTGCGAGGAGAGG
ACGGCACTGTTTACCAGGTAGCGGGAAAAAATGCGGAGGGACAAACTATT
CTCGTTACGCAGGGCCCGGATGGAGAACAGCAATTTGCGTACGTGGCAGC
CGCAGAGGGAGAAGACCAGGATGTTCTTTCTCTGGACCACGCAGTGGCCG
AAGCCGTTCAAGCCGGTGAACAGGTCGAGTCTCACGGCGTCGGAGCAGCT
ACGGCGGACGGTGAACAGATTCTCGTGTCCATGACAGAAGAGGAGTTGGC
GCAACACCAGGTGCTTCAACAAGCGGAGGCTTCTGCCGCTGGAACGGGAA
CGCCACCCACAGCTCAGATCCATATCACGACGTCAGACAGCGATGGCACG
GAATCCCAGATACCAGCGGAGGTGGTACAGGCAGATTTGCCTTCACCGGG
AGGTACACGTCGCGTTGTTTTGTTGCTTCAGGATGGAACCTTCATGATGA
CTGAGATGCACGAAGATCAGTTTAAGACGCTCAACATCCCAACGTAAAAG
CTTTCTAGACCAT
BS28531.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:22:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Chro-RE | 2781 | CG10712-PE | 1..2781 | 17..2797 | 13905 | 100 | Plus |
Chro-RD | 2781 | CG10712-PD | 1..2781 | 17..2797 | 13905 | 100 | Plus |
Chro-RA | 2781 | CG10712-PA | 1..2781 | 17..2797 | 13905 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:22:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Chro-RE | 4056 | CG10712-RE | 376..3158 | 17..2799 | 13915 | 100 | Plus |
Chro-RD | 3915 | CG10712-RD | 235..3017 | 17..2799 | 13915 | 100 | Plus |
Chro-RA | 3871 | CG10712-RA | 191..2973 | 17..2799 | 13915 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:22:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 22875123..22876391 | 2700..1432 | 6345 | 100 | Minus |
3L | 28110227 | 3L | 22876457..22877388 | 1432..501 | 4660 | 100 | Minus |
3L | 28110227 | 3L | 22877450..22877877 | 500..73 | 2140 | 100 | Minus |
3L | 28110227 | 3L | 22874600..22874700 | 2799..2699 | 505 | 100 | Minus |
3L | 28110227 | 3L | 22877937..22877994 | 74..17 | 290 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 04:22:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6773..6849 | 2153..2227 | 155 | 70.5 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1067..1140 | 2153..2227 | 147 | 68 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2343..2396 | 2165..2218 | 135 | 72.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2761..2876 | 2154..2274 | 134 | 64 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1100..1165 | 2153..2215 | 134 | 69.7 | Plus |
BS28531.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-06 13:46:47 Download gff for
BS28531.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Chro-RA | 153..2926 | 22..2795 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:17:25 Download gff for
BS28531.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Chro-RC | 96..2869 | 22..2795 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:26:54 Download gff for
BS28531.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Chro-RA | 196..2969 | 22..2795 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:26:54 Download gff for
BS28531.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 22874604..22874699 | 2700..2795 | 100 | <- | Minus |
3L | 22875124..22876390 | 1433..2699 | 100 | <- | Minus |
3L | 22876457..22877388 | 501..1432 | 100 | <- | Minus |
3L | 22877450..22877875 | 75..500 | 100 | <- | Minus |
3L | 22877937..22877989 | 22..74 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:17:25 Download gff for
BS28531.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 22867704..22867799 | 2700..2795 | 100 | <- | Minus |
arm_3L | 22868224..22869490 | 1433..2699 | 100 | <- | Minus |
arm_3L | 22869557..22870488 | 501..1432 | 100 | <- | Minus |
arm_3L | 22870550..22870975 | 75..500 | 100 | <- | Minus |
arm_3L | 22871037..22871089 | 22..74 | 100 | | Minus |
BS28531.pep Sequence
Translation from 16 to 2796
> BS28531.pep
MLAQEISPTEIGKHANIIRAAQEELANMDVLVCGRCLRAYNFVEEFQAHK
EDACEKENANLKESLDPKPTIWAFTLWKATQLHSRKDASGSSWALYQHWV
KLDDSVREPWIVAGKTIQSFGKIAHGQLQDMPVRITKTVVNPNNNNTSNS
NNNNTSVSPTRKSPTGKLPTLANQLKDTENERPKSKPSTPTPSSVPSAGA
VKPNNRIAIRIDSKTDQRTEEPVEKIVAKRFNPRRKTHEYLVKWVDRSHH
ENTWEVMANLERVPYFLQMFEKQLARQKLTREKGLDALKRMQSSGTNAKS
DTAAPHSPLPASSQVSPSSRPSRTSKTKAMDAFKQWVNETVAGDGSSSPS
SANEDESSTEQEWPPSSGAIKRKLNNTDSSLEGSGLNDSMDLEDLEEDLP
SHTVKRLKNGGSSVQLNKPRIQSTEKQQTKINGNSTVVSPLTEQKMGEII
YTEDSTSSGMFRKPEMPNTINLKKEKPECPVRYLSRSEVGSSTRGVFRVE
NSEAPAPVSPAPVPQKVIAAPPAAGIAKRLPMARPAHSGANSPITVGQRQ
HALRTPGHGPVTAALHRRPGVGGASHVRQNLQQAPGRAHPGGRVLARAGV
GTPQHRQQVQTPQGAKAVTPEQKILQLSKSGDLKVTRKVVTREELLAQRS
AQARQRQALSQQQSSQQQKATPARQRIVSKSTIQPTPLQMELEEEIHQHQ
AQLCPITGKLIGQEETQLQMEQEQQQEQQREQLEAAAQALLGSDQQVLTN
EDGSALLVRGEDGTVYQVAGKNAEGQTILVTQGPDGEQQFAYVAAAEGED
QDVLSLDHAVAEAVQAGEQVESHGVGAATADGEQILVSMTEEELAQHQVL
QQAEASAAGTGTPPTAQIHITTSDSDGTESQIPAEVVQADLPSPGGTRRV
VLLLQDGTFMMTEMHEDQFKTLNIPT*
BS28531.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:13:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Chro-PE | 926 | CG10712-PE | 1..926 | 1..926 | 4736 | 100 | Plus |
Chro-PD | 926 | CG10712-PD | 1..926 | 1..926 | 4736 | 100 | Plus |
Chro-PA | 926 | CG10712-PA | 1..926 | 1..926 | 4736 | 100 | Plus |
Chro-PC | 926 | CG10712-PC | 1..926 | 1..926 | 4736 | 100 | Plus |
Chro-PB | 926 | CG10712-PB | 1..926 | 1..926 | 4736 | 100 | Plus |