Clone BS28533 Report

Search the DGRC for BS28533

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:285
Well:33
Vector:pDNR-Dual
Associated Gene/TranscriptCG31606-RB
Protein status:BS28533.pep: gold
Sequenced Size:626

Clone Sequence Records

BS28533.complete Sequence

626 bp assembled on 2012-03-26

GenBank Submission: KX804540

> BS28533.complete
GAAGTTATCAGTCGACATGTCATTTCCTCGGATCATTTTTTTCCTTGTGT
TGCTGGCATTTGCCAGGAGTGATCCTGTTGAAAGGAATACGGAAGCCATT
TGCCAGTTTTTCCAACACGTTCGAGCGTTTCAAGCAGACTGGTGGGAGGA
CTCAGTTATCCTGATGAAGAGAATGTTGGAGGAAATGGTCAATGCCCTAG
AGCCCTATATCGAATATGCAGAGTACAGGAAAACCATGCAGGACTATCTC
GAGCATGGAAAGACCATAGTTACGTCCAGTCGTTTGGAAGATAAGATGGC
ATTTGTTCAAGGATTCAATGAACACGGTGACCAGCCAACTCTAGTCGGAT
CACCCTCCAAGAGGCAGGCGCTCACCAGACCTCTAAACCATTTCCAATCG
AATATGATTTCCAAAGTGTTCACTGAGTTCCATAAAAAACTGATCAAAGC
TGCTGACGACTTGGAGCGAGTAGTGCGATTCCCGGATAACTCTGCTAGGG
GGGAACTTTTTGGGCTTCTCGAGCAATATCGGGCCAGTGGTATTGGAAGT
ATGACTGAAGAGATAGCTTCTCGAATCCTGGCGCTAAAGGATAATTACCA
GTGTGCCTAGAAGCTTTCTAGACCAT

BS28533.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:08:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG31606-RB 594 CG31606-PB 1..594 17..610 2970 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:08:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG31606-RB 690 CG31606-RB 20..614 17..611 2975 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:08:16
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8147724..8148280 55..611 2785 100 Plus
2L 23513712 2L 8147630..8147669 17..56 200 100 Plus
Blast to na_te.dros performed on 2014-11-28 04:08:17 has no hits.

BS28533.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-26 11:13:13 Download gff for BS28533.complete
Subject Subject Range Query Range Percent Splice Strand
CG31606-RB 1..594 17..610 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:10:55 Download gff for BS28533.complete
Subject Subject Range Query Range Percent Splice Strand
CG31606-RB 20..613 17..610 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:20:37 Download gff for BS28533.complete
Subject Subject Range Query Range Percent Splice Strand
CG31606-RB 20..613 17..610 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:20:37 Download gff for BS28533.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8147630..8147668 17..55 100 -> Plus
2L 8147725..8148279 56..610 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:10:55 Download gff for BS28533.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8147630..8147668 17..55 100 -> Plus
arm_2L 8147725..8148279 56..610 100   Plus

BS28533.pep Sequence

Translation from 16 to 609

> BS28533.pep
MSFPRIIFFLVLLAFARSDPVERNTEAICQFFQHVRAFQADWWEDSVILM
KRMLEEMVNALEPYIEYAEYRKTMQDYLEHGKTIVTSSRLEDKMAFVQGF
NEHGDQPTLVGSPSKRQALTRPLNHFQSNMISKVFTEFHKKLIKAADDLE
RVVRFPDNSARGELFGLLEQYRASGIGSMTEEIASRILALKDNYQCA*

BS28533.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:01:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG31606-PB 197 CG31606-PB 1..197 1..197 1016 100 Plus