BS28536.complete Sequence
506 bp assembled on 2012-03-26
GenBank Submission: KX801071
> BS28536.complete
GAAGTTATCAGTCGACATGAGACCCGAATTCGTCCTGGCCTTTGGTTTGG
TTGTCCTCGTGGCGACCGTTTATGGTGGCACCGACTCATCCTCGAGCGAC
TCGTCCTCTTCCACATCACCCACTTCCAATTCATCGACTCCATCGACTTC
CAGCTCAAGTTCGACACCCAGCTCTTCGTCCTCCACCTCAACTCCGTCCA
GCAATAGCACTACGTCTACTTCGTCCTCCACTCCTAGCAGCTCTTCTTCC
ACTTCGCCCACTTCCTCCACCTCATCGACGACTGCCACAACCACGGCCCC
CTCCACGTCCAGCGACACGTCCTCCTCCTCCACGAGCTCCGACAGCGAGG
AGGTGGACAGGCTGAGGCGCAGGCTTCGCAGGCTCCGGCGGCTGAGGCGT
CAGGAGAGGCGCCAGGAGATTCGCCGGGAGAGGCAGCAGGAAAGGCGCCA
GCAGAGTCGTGCTGGAAGAAGGCGCCAACGTAGGGGATAAAAGCTTTCTA
GACCAT
BS28536.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:08:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34105-RA | 474 | CG34105-PA | 1..474 | 17..490 | 2370 | 100 | Plus |
| CG12491-RA | 474 | CG12491-PA | 1..474 | 17..490 | 2370 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:08:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34105-RA | 574 | CG34105-RA | 40..514 | 17..491 | 2375 | 100 | Plus |
| CG12491-RA | 580 | CG12491-RA | 40..514 | 17..491 | 2375 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:08:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23749378..23749852 | 491..17 | 2375 | 100 | Minus |
| 2R | 25286936 | 2R | 23750685..23751159 | 17..491 | 2375 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 04:08:03 has no hits.
BS28536.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-26 11:13:10 Download gff for
BS28536.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34105-RA | 1..472 | 17..488 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:10:46 Download gff for
BS28536.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34105-RA | 40..511 | 17..488 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:20:32 Download gff for
BS28536.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12491-RA | 40..511 | 17..488 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:20:32 Download gff for
BS28536.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23750685..23751156 | 17..488 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:10:46 Download gff for
BS28536.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19638208..19638679 | 17..488 | 100 | | Plus |
BS28536.pep Sequence
Translation from 16 to 489
> BS28536.pep
MRPEFVLAFGLVVLVATVYGGTDSSSSDSSSSTSPTSNSSTPSTSSSSST
PSSSSSTSTPSSNSTTSTSSSTPSSSSSTSPTSSTSSTTATTTAPSTSSD
TSSSSTSSDSEEVDRLRRRLRRLRRLRRQERRQEIRRERQQERRQQSRAG
RRRQRRG*
BS28536.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:00:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34105-PA | 157 | CG34105-PA | 1..157 | 1..157 | 746 | 100 | Plus |
| CG12491-PA | 157 | CG12491-PA | 1..157 | 1..157 | 746 | 100 | Plus |
| CG13560-PB | 181 | CG13560-PB | 1..181 | 1..150 | 275 | 40.3 | Plus |
| CG13560-PA | 181 | CG13560-PA | 1..181 | 1..150 | 275 | 40.3 | Plus |
| CG11300-PA | 157 | CG11300-PA | 1..152 | 1..155 | 242 | 38.1 | Plus |
