BS28540.complete Sequence
671 bp assembled on 2012-05-15
GenBank Submission: KX806049
> BS28540.complete
GAAGTTATCAGTCGACATGTCTTCTAATGAGAATTGCCAAGGAAATCGCC
GCATTTCGGAAAATCAGCATTGGAACAACATAAGGCTCAATTGTAAGGCC
CTCCCAAGATTGAAGAGCTTCTTCTACTTTTTCGATTTGGAAAAAGGATG
CAGGATTATAGCGGGCTTTGAGGCTTTGGTGAGCGTAATACAGATATTCA
GTATATATCGTTTATCCAATCAATCAGTGCCAAGTTATATGATACCTGAT
CCCTTTTGGATCACAAAAATCGATAGGGAAGGAATAATCAAAAGAATGTT
GCTTTATCATACAAGTAATCGTTTTTGCATGGGACTCGGATTGGTTACTG
TTCTCAATTCTCTGCTGTTGCTAATTGGAAGCAAATGGGGCCACCAGGTT
TGCCTCTTTCTTTGGATTTATATAACGGTATTCACCACTCTCATATCGAA
TATAAATAATAACTTAAGGAACCCAAATTTTGCACAAACTTTTCTAATAG
TTCCATCATTGACTCTGGAGGGCTATTTCACATTGATAGTCGCATCTTTA
ATTTGTAAATTCCAAGACAAGCAAGATGAGTGTAACTCATACACCGAAAT
GCACACTTCAGATGGCAAAGAGTGCAGTTCTATCGAGAATACCGAACAGA
TATAAAAGCTTTCTAGACCAT
BS28540.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:20:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30472-RB | 639 | CG30472-PB | 1..639 | 17..655 | 3195 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:20:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30472-RB | 839 | CG30472-RB | 85..723 | 17..655 | 3195 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:20:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 15423683..15424055 | 389..17 | 1865 | 100 | Minus |
| 2R | 25286936 | 2R | 15423301..15423443 | 655..513 | 715 | 100 | Minus |
| 2R | 25286936 | 2R | 15423501..15423625 | 512..388 | 625 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 11:20:54 has no hits.
BS28540.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-15 14:08:14 Download gff for
BS28540.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30472-RA | 38..674 | 17..653 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:20:27 Download gff for
BS28540.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30472-RB | 53..689 | 17..653 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:41:01 Download gff for
BS28540.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30472-RB | 85..721 | 17..653 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:41:01 Download gff for
BS28540.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 15423501..15423624 | 389..512 | 100 | <- | Minus |
| 2R | 15423303..15423443 | 513..653 | 100 | <- | Minus |
| 2R | 15423684..15424055 | 17..388 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:20:27 Download gff for
BS28540.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11311006..11311129 | 389..512 | 100 | <- | Minus |
| arm_2R | 11310808..11310948 | 513..653 | 100 | <- | Minus |
| arm_2R | 11311189..11311560 | 17..388 | 100 | | Minus |
BS28540.pep Sequence
Translation from 16 to 654
> BS28540.pep
MSSNENCQGNRRISENQHWNNIRLNCKALPRLKSFFYFFDLEKGCRIIAG
FEALVSVIQIFSIYRLSNQSVPSYMIPDPFWITKIDREGIIKRMLLYHTS
NRFCMGLGLVTVLNSLLLLIGSKWGHQVCLFLWIYITVFTTLISNINNNL
RNPNFAQTFLIVPSLTLEGYFTLIVASLICKFQDKQDECNSYTEMHTSDG
KECSSIENTEQI*
BS28540.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:35:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30472-PB | 212 | CG30472-PB | 1..212 | 1..212 | 1123 | 100 | Plus |
| CG34188-PA | 204 | CG34188-PA | 14..186 | 19..185 | 282 | 39.1 | Plus |
