Clone BS28541 Report

Search the DGRC for BS28541

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:285
Well:41
Vector:pDNR-Dual
Associated Gene/TranscriptCG42823-RA
Protein status:BS28541.pep: gold
Sequenced Size:488

Clone Sequence Records

BS28541.complete Sequence

488 bp assembled on 2012-03-26

GenBank Submission: KX802354

> BS28541.complete
GAAGTTATCAGTCGACATGCCCAACGTGATCGTCAACCTGTCATTAATTT
TCTTATTCTTGGGTGGTATTTTCCATCTCAATGAAGCCCAGACAACGGAT
TGTTCGAATTCGTGTATTTTTCGAGCAAGATGCACTCCCTACTACAAGGA
TTTGGTCTGGTCAGTGGTGGACCGCGTTTGTCGGGTCTTTCAAAACGGTT
GCATCTTTGCCAATGAAAATTGCATGAGAGCCAATCGCTGCTTGCCACCC
ATGGTAGCCACCACAAAGGAAGAGTGTACGAAGGAGATCTACTGTCCAAG
GTGGTGTTCCCGAGGAGCTCCGCCGGTCTGCGCATGGTTTCCCTATACAG
ACAGTAATGGGAATACCGGAGGTCGAGACATGTCATTCGGAAGTCGCTGT
CTACTAGACATGTATGCCTGCCGTAATGAACAGGCCTATGTCAACGAACC
ACGTATAGGATCGTGCACATAAAAGCTTTCTAGACCAT

BS28541.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:08:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG42823-RA 456 CG42823-PA 1..456 17..472 2280 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:08:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG42823-RA 508 CG34053-RB 4..462 16..474 2295 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:08:40
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17404874..17405106 248..16 1165 100 Minus
3R 32079331 3R 17404630..17404815 434..249 930 100 Minus
3R 32079331 3R 17404533..17404573 474..434 205 100 Minus
Blast to na_te.dros performed on 2014-11-28 04:08:41 has no hits.

BS28541.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-26 11:13:17 Download gff for BS28541.complete
Subject Subject Range Query Range Percent Splice Strand
CG42823-RA 5..458 17..470 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:11:06 Download gff for BS28541.complete
Subject Subject Range Query Range Percent Splice Strand
CG42823-RA 5..458 17..470 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:20:47 Download gff for BS28541.complete
Subject Subject Range Query Range Percent Splice Strand
CG42823-RA 5..458 17..470 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:20:47 Download gff for BS28541.complete
Subject Subject Range Query Range Percent Splice Strand
3R 17404874..17405105 17..248 100   Minus
3R 17404537..17404572 435..470 100 <- Minus
3R 17404630..17404815 249..434 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:11:06 Download gff for BS28541.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 13230259..13230294 435..470 100 <- Minus
arm_3R 13230352..13230537 249..434 100 <- Minus
arm_3R 13230596..13230827 17..248 100   Minus

BS28541.pep Sequence

Translation from 16 to 471

> BS28541.pep
MPNVIVNLSLIFLFLGGIFHLNEAQTTDCSNSCIFRARCTPYYKDLVWSV
VDRVCRVFQNGCIFANENCMRANRCLPPMVATTKEECTKEIYCPRWCSRG
APPVCAWFPYTDSNGNTGGRDMSFGSRCLLDMYACRNEQAYVNEPRIGSC
T*

BS28541.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:01:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG42823-PA 151 CG42823-PA 1..151 1..151 853 100 Plus
CG7695-PA 145 CG7695-PA 7..131 6..141 146 28.7 Plus
CG7587-PA 142 CG7587-PA 32..138 38..143 145 33.6 Plus