BS28541.complete Sequence
488 bp assembled on 2012-03-26
GenBank Submission: KX802354
> BS28541.complete
GAAGTTATCAGTCGACATGCCCAACGTGATCGTCAACCTGTCATTAATTT
TCTTATTCTTGGGTGGTATTTTCCATCTCAATGAAGCCCAGACAACGGAT
TGTTCGAATTCGTGTATTTTTCGAGCAAGATGCACTCCCTACTACAAGGA
TTTGGTCTGGTCAGTGGTGGACCGCGTTTGTCGGGTCTTTCAAAACGGTT
GCATCTTTGCCAATGAAAATTGCATGAGAGCCAATCGCTGCTTGCCACCC
ATGGTAGCCACCACAAAGGAAGAGTGTACGAAGGAGATCTACTGTCCAAG
GTGGTGTTCCCGAGGAGCTCCGCCGGTCTGCGCATGGTTTCCCTATACAG
ACAGTAATGGGAATACCGGAGGTCGAGACATGTCATTCGGAAGTCGCTGT
CTACTAGACATGTATGCCTGCCGTAATGAACAGGCCTATGTCAACGAACC
ACGTATAGGATCGTGCACATAAAAGCTTTCTAGACCAT
BS28541.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:08:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42823-RA | 456 | CG42823-PA | 1..456 | 17..472 | 2280 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:08:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42823-RA | 508 | CG34053-RB | 4..462 | 16..474 | 2295 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:08:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 17404874..17405106 | 248..16 | 1165 | 100 | Minus |
3R | 32079331 | 3R | 17404630..17404815 | 434..249 | 930 | 100 | Minus |
3R | 32079331 | 3R | 17404533..17404573 | 474..434 | 205 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 04:08:41 has no hits.
BS28541.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-26 11:13:17 Download gff for
BS28541.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42823-RA | 5..458 | 17..470 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:11:06 Download gff for
BS28541.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42823-RA | 5..458 | 17..470 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:20:47 Download gff for
BS28541.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42823-RA | 5..458 | 17..470 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:20:47 Download gff for
BS28541.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17404874..17405105 | 17..248 | 100 | | Minus |
3R | 17404537..17404572 | 435..470 | 100 | <- | Minus |
3R | 17404630..17404815 | 249..434 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:11:06 Download gff for
BS28541.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 13230259..13230294 | 435..470 | 100 | <- | Minus |
arm_3R | 13230352..13230537 | 249..434 | 100 | <- | Minus |
arm_3R | 13230596..13230827 | 17..248 | 100 | | Minus |
BS28541.pep Sequence
Translation from 16 to 471
> BS28541.pep
MPNVIVNLSLIFLFLGGIFHLNEAQTTDCSNSCIFRARCTPYYKDLVWSV
VDRVCRVFQNGCIFANENCMRANRCLPPMVATTKEECTKEIYCPRWCSRG
APPVCAWFPYTDSNGNTGGRDMSFGSRCLLDMYACRNEQAYVNEPRIGSC
T*
BS28541.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:01:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42823-PA | 151 | CG42823-PA | 1..151 | 1..151 | 853 | 100 | Plus |
CG7695-PA | 145 | CG7695-PA | 7..131 | 6..141 | 146 | 28.7 | Plus |
CG7587-PA | 142 | CG7587-PA | 32..138 | 38..143 | 145 | 33.6 | Plus |