BS28544.complete Sequence
824 bp assembled on 2012-03-26
GenBank Submission: KX806219
> BS28544.complete
GAAGTTATCAGTCGACATGTCTGCCCAAGTGGAGAGCAATGGTGCCAGTG
AAAGTAATAACAATTGCGTCAAGGATGTCAGGCTCCTGCTGCTGCCGGAG
AATTCCACGGATTCGGATGGCAATCCGGCGAGTGTCGCATTCAGTGCGGA
ATCGCACAAGAAATTCATTGATGACCTGACACGAACCATTGACGTGGGCC
ATGTGAGGAGGAAGCGATTGTGGCGGGTGCCCTGGTTTATTTTGCTGATG
AGTTTTGTGCAGATATCTTTGCACTGGATAGCTAGTGAGTGTATGCAAAA
AGTACTGATCTTCAAACCGGAATGGAACGTCGAGTACTGGCGCCTACTGA
CCTATATGCTGCTCCATTCCGATTACTGGCATCTGTCTCTCAACATTTGC
TTTCAGTGCTTTATAGGTATCTGCCTGGAAGTGGAGCAGGGTCACTGGCG
TCTGGCCGTGGTCTATATGGTGGGTGGCGTCGCTGGTTCGCTGGCCAATG
CCTGGCTGCAGCCCCATCTCCATCTGATGGGTGCCTCCGCTGGGGTCTAC
GCCATGCTGGGAAGTCATGTGCCGCACCTGGTTCTGAACTTTTCGCAATT
GTCGCACCGCTTTGCCCGCATCGCCTCCCTGCTGATATTGTTACTCAGCG
ATGTGGGCTTTACAACTTACCACTTTTGCCACAATCACAATCGCAATCCG
CGCACCAGTCTGGAGGCGCATATTGGAGGGGGCGTGGCCGGAATTCTGTG
CGGTTTCATCGTCTATCGACGCCTGCAGCCAGCCAATCAAAAGGCCATTT
ACTTTTAGAAGCTTTCTAGACCAT
BS28544.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:08:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rho-6-RB | 792 | CG17212-PB | 1..792 | 17..808 | 3960 | 100 | Plus |
| rho-6-RC | 501 | CG17212-PC | 1..501 | 17..527 | 2370 | 98 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:08:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rho-6-RB | 944 | CG17212-RB | 73..864 | 17..808 | 3960 | 100 | Plus |
| rho-6-RC | 934 | CG17212-RC | 73..854 | 17..808 | 3775 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:08:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 12133094..12133339 | 262..17 | 1230 | 100 | Minus |
| 2L | 23513712 | 2L | 12130596..12130818 | 808..586 | 1115 | 100 | Minus |
| 2L | 23513712 | 2L | 12130886..12131068 | 586..404 | 915 | 100 | Minus |
| 2L | 23513712 | 2L | 12131292..12131438 | 406..260 | 735 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 04:08:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gypsy | 7469 | gypsy DMGYPF1A 7469bp Derived from M12927 (g157583) (Rel. 44, Last updated, Version 6). | 5936..5973 | 435..397 | 111 | 79.5 | Minus |
BS28544.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-26 11:13:19 Download gff for
BS28544.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rho-6-RB | 29..820 | 17..808 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:11:12 Download gff for
BS28544.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rho-6-RB | 29..820 | 17..808 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:20:53 Download gff for
BS28544.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rho-6-RB | 73..864 | 17..808 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:20:53 Download gff for
BS28544.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 12130596..12130817 | 587..808 | 100 | <- | Minus |
| 2L | 12130886..12131065 | 407..586 | 100 | <- | Minus |
| 2L | 12131292..12131435 | 263..406 | 100 | <- | Minus |
| 2L | 12133094..12133339 | 17..262 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:11:12 Download gff for
BS28544.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 12133094..12133339 | 17..262 | 100 | | Minus |
| arm_2L | 12130596..12130817 | 587..808 | 100 | <- | Minus |
| arm_2L | 12130886..12131065 | 407..586 | 100 | <- | Minus |
| arm_2L | 12131292..12131435 | 263..406 | 100 | <- | Minus |
BS28544.pep Sequence
Translation from 16 to 807
> BS28544.pep
MSAQVESNGASESNNNCVKDVRLLLLPENSTDSDGNPASVAFSAESHKKF
IDDLTRTIDVGHVRRKRLWRVPWFILLMSFVQISLHWIASECMQKVLIFK
PEWNVEYWRLLTYMLLHSDYWHLSLNICFQCFIGICLEVEQGHWRLAVVY
MVGGVAGSLANAWLQPHLHLMGASAGVYAMLGSHVPHLVLNFSQLSHRFA
RIASLLILLLSDVGFTTYHFCHNHNRNPRTSLEAHIGGGVAGILCGFIVY
RRLQPANQKAIYF*
BS28544.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:02:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rho-6-PB | 263 | CG17212-PB | 1..263 | 1..263 | 1409 | 100 | Plus |
| rho-6-PC | 166 | CG17212-PC | 1..130 | 1..130 | 698 | 100 | Plus |
| rho-PB | 355 | CG1004-PB | 84..297 | 54..251 | 328 | 32.2 | Plus |
| rho-PA | 355 | CG1004-PA | 84..297 | 54..251 | 328 | 32.2 | Plus |
| ru-PA | 341 | CG1214-PA | 95..284 | 69..253 | 317 | 32.6 | Plus |
