BS28545.complete Sequence
737 bp assembled on 2012-03-26
GenBank Submission: KX802505
> BS28545.complete
GAAGTTATCAGTCGACATGGCCCCAAGTTTGGGACAGTTGCCTCCTGAGA
TCGAGAAATGCAGGGCTGGCGATTCCATCTGCATAGCGGAAACAGTCACC
AGGATTCTGCGCTTGTATCCGAAGGGTCTGCCTTCCATTGGATTGGTTGC
TCTGGACTCCATTGGATTCGAGGATGTCGTCGTTAGTCGGTTGGAACCAG
ATGGGTCATCTACTTTTGATTTGAAATTCCCTAACCTAACCGTAATCGGA
TTCGCAGACTCCACAGTGACGGAGGCAAAGGGATTCGATGCGGATTTGCC
TCGGGTCCTCGAGTTGAGTGGCTGGATTCCATTGCTGAAACTCAATGGAA
CTTACGAGATGAGGGGCAGTTTGCTGACTATGCCCATTCATGGCAAAGGT
CAAGCCAAGGTGGAGATCAGAGAATGCCGCGTTCGTTGCAAAGTGCGAGT
TCTGGAGGATCTCCGAGACGATGGCAAGCTATATGCCGGAATATCCAAGG
TCAAGTGCTTGCTGGATGTGCAGGGCATGCACTTGAACTTGGAAAATCTT
TTCAACAATCCTGAAATGAGCGATGCCATGAACGTTGTGGCCAACACAAA
GTGGCTGGAAATTTGGCATAACCTTCGCAGGGGTATCACCTCTGCGGTGG
ATCAGTTGGTCGAGTCGATTCTCCAGCGAGTAGCTAATAAGTTACCATAT
GACGATTTGTATAGGGACTGAAAGCTTTCTAGACCAT
BS28545.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:08:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17279-RB | 705 | CG17279-PB | 1..705 | 17..721 | 3510 | 99.9 | Plus |
| CG17279-RC | 480 | CG17279-PC | 173..480 | 257..564 | 1540 | 100 | Plus |
| CG17279-RC | 480 | CG17279-PC | 1..173 | 17..189 | 850 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:09:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17279-RB | 810 | CG17279-RB | 29..736 | 17..724 | 3525 | 99.9 | Plus |
| CG17279-RC | 742 | CG17279-RC | 201..668 | 257..724 | 2340 | 100 | Plus |
| CG17279-RC | 742 | CG17279-RC | 29..201 | 17..189 | 850 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:08:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21050346..21050829 | 525..42 | 2405 | 99.8 | Minus |
| 3R | 32079331 | 3R | 21050088..21050287 | 724..525 | 1000 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 04:08:59 has no hits.
BS28545.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-26 11:13:20 Download gff for
BS28545.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17279-RB | 1..704 | 17..720 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:11:14 Download gff for
BS28545.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17279-RB | 29..732 | 17..720 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:20:54 Download gff for
BS28545.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17279-RB | 29..732 | 17..720 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:20:54 Download gff for
BS28545.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21050092..21050286 | 526..720 | 100 | <- | Minus |
| 3R | 21050346..21050829 | 42..525 | 99 | <- | Minus |
| 3R | 21050891..21050915 | 17..41 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:11:14 Download gff for
BS28545.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16875814..16876008 | 526..720 | 100 | <- | Minus |
| arm_3R | 16876068..16876551 | 42..525 | 99 | <- | Minus |
| arm_3R | 16876613..16876637 | 17..41 | 100 | | Minus |
BS28545.pep Sequence
Translation from 16 to 720
> BS28545.pep
MAPSLGQLPPEIEKCRAGDSICIAETVTRILRLYPKGLPSIGLVALDSIG
FEDVVVSRLEPDGSSTFDLKFPNLTVIGFADSTVTEAKGFDADLPRVLEL
SGWIPLLKLNGTYEMRGSLLTMPIHGKGQAKVEIRECRVRCKVRVLEDLR
DDGKLYAGISKVKCLLDVQGMHLNLENLFNNPEMSDAMNVVANTKWLEIW
HNLRRGITSAVDQLVESILQRVANKLPYDDLYRD*
BS28545.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:02:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17279-PB | 234 | CG17279-PB | 1..234 | 1..234 | 1209 | 100 | Plus |
| CG11854-PB | 250 | CG11854-PB | 24..248 | 9..232 | 312 | 30.1 | Plus |
| CG17279-PC | 159 | CG17279-PC | 1..82 | 1..82 | 309 | 78 | Plus |
| CG31189-PB | 258 | CG31189-PB | 23..248 | 8..232 | 285 | 29.1 | Plus |
| CG31207-PA | 258 | CG31207-PA | 22..247 | 8..232 | 278 | 29.5 | Plus |
