BS28547.complete Sequence
845 bp assembled on 2012-03-26
GenBank Submission: KX803105
> BS28547.complete
GAAGTTATCAGTCGACATGACGTCAAGGCTAATCCTTCTTCTATCGGTCT
TTGGGGTTATTCCAAACGCGATGATCCCGAAAAGTCCAGTCAATATCGAT
GTATGTCCCCGATCATCCCGGAAATCAGAGTCTAGCTATTTGATGGCCGA
ATATGGAGATGGATTAATTACCCGCATTGATGAGGGCAACTGGAAGGAAG
TGCTTACTGGCGAGTGGCTTTTGCTAATCTGTTCGTCACACCAGCCGAGT
TGCGGAGATTGGAAAGCGGTCTTATACCAGCTGGCTAGCACCTCAATGGG
TTGCCTCGATGTGGACTTGGCTTTTGGTGATCTCTCCACCAATTTTTGGC
TAAGGGGACGATTTTCCGCCTTTCGGGAGGCTAACGTGTACCATGTGGTG
GATGGGGAATTTCGGAGACTGAGCTCCAGCCACGATACTAACTCCATTCT
CAATCTTTTGCTTCTGCGCGAATGGTCAGAGTTACCTCCAATGCCATTTT
GGTTACATCCGACCTCCACATGGAGCACATCCGCCGAATTTGTTTTAAAA
ACGGCCGTGGATCTAAAGGACTTGGATATTCTTGGGCGCAACGCTTGGAA
GACCGCCCTTATTCTGGACTTAATTTTTTTCATCGTAACACCGTACATTT
TATGGCTTACTATAATGACAACTACGGAGAATATGATGGTGAATGATGAA
TTTAAGCTAGGACCAACCGAAAGTAGTAGTCCACTTCCGCTGAAATCGAT
TTCTAAAATTAAAAGCACAACTCCAATATTTTTACAGAAGCTAAGACAAC
TGAGAGAATCTAAGTTCAAAAGTATTTAAAAGCTTTCTAGACCAT
BS28547.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:08:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11588-RB | 813 | CG11588-PB | 1..813 | 17..829 | 4065 | 100 | Plus |
| CG11588-RA | 813 | CG11588-PA | 1..813 | 17..829 | 4065 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:08:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11588-RB | 1087 | CG11588-RB | 104..918 | 17..831 | 4075 | 100 | Plus |
| CG11588-RA | 975 | CG11588-RA | 104..918 | 17..831 | 4075 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:08:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11921616..11922430 | 17..831 | 4075 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 04:08:21 has no hits.
BS28547.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-26 11:13:14 Download gff for
BS28547.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11588-RA | 51..861 | 17..827 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:10:56 Download gff for
BS28547.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11588-RA | 104..914 | 17..827 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:20:38 Download gff for
BS28547.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11588-RA | 104..914 | 17..827 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:20:38 Download gff for
BS28547.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11921616..11922426 | 17..827 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:10:56 Download gff for
BS28547.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11914716..11915526 | 17..827 | 100 | | Plus |
BS28547.pep Sequence
Translation from 16 to 828
> BS28547.pep
MTSRLILLLSVFGVIPNAMIPKSPVNIDVCPRSSRKSESSYLMAEYGDGL
ITRIDEGNWKEVLTGEWLLLICSSHQPSCGDWKAVLYQLASTSMGCLDVD
LAFGDLSTNFWLRGRFSAFREANVYHVVDGEFRRLSSSHDTNSILNLLLL
REWSELPPMPFWLHPTSTWSTSAEFVLKTAVDLKDLDILGRNAWKTALIL
DLIFFIVTPYILWLTIMTTTENMMVNDEFKLGPTESSSPLPLKSISKIKS
TTPIFLQKLRQLRESKFKSI*
BS28547.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:01:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11588-PB | 270 | CG11588-PB | 1..270 | 1..270 | 1406 | 100 | Plus |
| CG11588-PA | 270 | CG11588-PA | 1..270 | 1..270 | 1406 | 100 | Plus |
| CG5554-PA | 323 | CG5554-PA | 36..173 | 49..187 | 180 | 28.1 | Plus |
| CG5554-PB | 330 | CG5554-PB | 36..170 | 49..184 | 173 | 27.9 | Plus |
