BS28548.complete Sequence
638 bp assembled on 2012-03-26
GenBank Submission: KX800599
> BS28548.complete
GAAGTTATCAGTCGACATGATTGGATTCCTGCTGATTGGAGTGGGCGTGT
ACGCGCGTGCCGCCTCCATAGTGACCAACCTGCCGATTGTGGGCGGGATC
CTGGCCTGCGGTGTCATCCTCATATGCATATCCATGCTGGGACTCGCCGG
AGCCGTCAAGCACCACCAAGTGATGCTCTTCTTCTACATGATCATTCTGT
TCATGCTGTTCCTGATCCAGTTCTCCATCGCCAGTTCCTGCTTGGCCGTC
AACTCCGAACAGCAGCAGCAGTTCGCCGAGCAAGGATGGATGACGGTGCC
CACGGATTTGCGCAAACAAGTGCAGGATAGTCTGAAATGCTGCGGATTCA
ATGCCACCGCACCGAGCACAACTTCCGTGGTTCCCCCGTCCAATGAGCCC
TCGTGCGAGCTGATCAATCAACAGTGCTGTGCCCACTCGTCCGAGCCGGA
CTGCCGTTGCGAACCATGTGGACCCCTACTGGAGGACAAGATCGACTATG
CCTTCAAGTTGTGCGGCGGTCTGGGCATCTTCTTCAGCTTCACTGAGTTC
GTCGGCGTCTGGCTAACAGTTCGCTATCGCAATCAAAAGGATCCGCGGGG
CTTGCCCAGCGCTTTTCTCTAAAAGCTTTCTAGACCAT
BS28548.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:08:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tsp97E-RG | 666 | CG6323-PG | 61..666 | 17..622 | 3030 | 100 | Plus |
Tsp97E-RD | 666 | CG6323-PD | 61..666 | 17..622 | 3030 | 100 | Plus |
Tsp97E-RE | 687 | CG6323-PE | 61..591 | 17..547 | 2655 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:08:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tsp97E-RG | 2298 | CG6323-RG | 176..782 | 17..623 | 3035 | 100 | Plus |
Tsp97E-RD | 2635 | CG6323-RD | 176..782 | 17..623 | 3035 | 100 | Plus |
Tsp97E-RE | 1757 | CG6323-RE | 176..706 | 17..547 | 2655 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:08:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 26963158..26963520 | 547..185 | 1815 | 100 | Minus |
3R | 32079331 | 3R | 26964118..26964285 | 184..17 | 840 | 100 | Minus |
3R | 32079331 | 3R | 26963005..26963082 | 623..546 | 390 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 04:08:25 has no hits.
BS28548.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-26 11:13:14 Download gff for
BS28548.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp97E-RD | 184..787 | 17..620 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:10:59 Download gff for
BS28548.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp97E-RF | 30..633 | 17..620 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:20:39 Download gff for
BS28548.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp97E-RD | 176..779 | 17..620 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:20:39 Download gff for
BS28548.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 26964118..26964285 | 17..184 | 100 | | Minus |
3R | 26963008..26963080 | 548..620 | 100 | <- | Minus |
3R | 26963158..26963520 | 185..547 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:10:59 Download gff for
BS28548.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 22789840..22790007 | 17..184 | 100 | | Minus |
arm_3R | 22788730..22788802 | 548..620 | 100 | <- | Minus |
arm_3R | 22788880..22789242 | 185..547 | 100 | <- | Minus |
BS28548.pep Sequence
Translation from 16 to 621
> BS28548.pep
MIGFLLIGVGVYARAASIVTNLPIVGGILACGVILICISMLGLAGAVKHH
QVMLFFYMIILFMLFLIQFSIASSCLAVNSEQQQQFAEQGWMTVPTDLRK
QVQDSLKCCGFNATAPSTTSVVPPSNEPSCELINQQCCAHSSEPDCRCEP
CGPLLEDKIDYAFKLCGGLGIFFSFTEFVGVWLTVRYRNQKDPRGLPSAF
L*
BS28548.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:01:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tsp97E-PG | 221 | CG6323-PG | 21..221 | 1..201 | 1065 | 100 | Plus |
Tsp97E-PD | 221 | CG6323-PD | 21..221 | 1..201 | 1065 | 100 | Plus |
Tsp97E-PE | 228 | CG6323-PE | 21..218 | 1..198 | 987 | 94.9 | Plus |
Tsp97E-PH | 228 | CG6323-PH | 21..218 | 1..198 | 987 | 94.9 | Plus |
Tsp97E-PA | 228 | CG6323-PA | 21..218 | 1..198 | 987 | 94.9 | Plus |