Clone BS28548 Report

Search the DGRC for BS28548

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:285
Well:48
Vector:pDNR-Dual
Associated Gene/TranscriptTsp97E-RF
Protein status:BS28548.pep: full length peptide match
Sequenced Size:638

Clone Sequence Records

BS28548.complete Sequence

638 bp assembled on 2012-03-26

GenBank Submission: KX800599

> BS28548.complete
GAAGTTATCAGTCGACATGATTGGATTCCTGCTGATTGGAGTGGGCGTGT
ACGCGCGTGCCGCCTCCATAGTGACCAACCTGCCGATTGTGGGCGGGATC
CTGGCCTGCGGTGTCATCCTCATATGCATATCCATGCTGGGACTCGCCGG
AGCCGTCAAGCACCACCAAGTGATGCTCTTCTTCTACATGATCATTCTGT
TCATGCTGTTCCTGATCCAGTTCTCCATCGCCAGTTCCTGCTTGGCCGTC
AACTCCGAACAGCAGCAGCAGTTCGCCGAGCAAGGATGGATGACGGTGCC
CACGGATTTGCGCAAACAAGTGCAGGATAGTCTGAAATGCTGCGGATTCA
ATGCCACCGCACCGAGCACAACTTCCGTGGTTCCCCCGTCCAATGAGCCC
TCGTGCGAGCTGATCAATCAACAGTGCTGTGCCCACTCGTCCGAGCCGGA
CTGCCGTTGCGAACCATGTGGACCCCTACTGGAGGACAAGATCGACTATG
CCTTCAAGTTGTGCGGCGGTCTGGGCATCTTCTTCAGCTTCACTGAGTTC
GTCGGCGTCTGGCTAACAGTTCGCTATCGCAATCAAAAGGATCCGCGGGG
CTTGCCCAGCGCTTTTCTCTAAAAGCTTTCTAGACCAT

BS28548.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:08:26
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp97E-RG 666 CG6323-PG 61..666 17..622 3030 100 Plus
Tsp97E-RD 666 CG6323-PD 61..666 17..622 3030 100 Plus
Tsp97E-RE 687 CG6323-PE 61..591 17..547 2655 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:08:27
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp97E-RG 2298 CG6323-RG 176..782 17..623 3035 100 Plus
Tsp97E-RD 2635 CG6323-RD 176..782 17..623 3035 100 Plus
Tsp97E-RE 1757 CG6323-RE 176..706 17..547 2655 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:08:24
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26963158..26963520 547..185 1815 100 Minus
3R 32079331 3R 26964118..26964285 184..17 840 100 Minus
3R 32079331 3R 26963005..26963082 623..546 390 100 Minus
Blast to na_te.dros performed on 2014-11-28 04:08:25 has no hits.

BS28548.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-26 11:13:14 Download gff for BS28548.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp97E-RD 184..787 17..620 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:10:59 Download gff for BS28548.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp97E-RF 30..633 17..620 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:20:39 Download gff for BS28548.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp97E-RD 176..779 17..620 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:20:39 Download gff for BS28548.complete
Subject Subject Range Query Range Percent Splice Strand
3R 26964118..26964285 17..184 100   Minus
3R 26963008..26963080 548..620 100 <- Minus
3R 26963158..26963520 185..547 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:10:59 Download gff for BS28548.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22789840..22790007 17..184 100   Minus
arm_3R 22788730..22788802 548..620 100 <- Minus
arm_3R 22788880..22789242 185..547 100 <- Minus

BS28548.pep Sequence

Translation from 16 to 621

> BS28548.pep
MIGFLLIGVGVYARAASIVTNLPIVGGILACGVILICISMLGLAGAVKHH
QVMLFFYMIILFMLFLIQFSIASSCLAVNSEQQQQFAEQGWMTVPTDLRK
QVQDSLKCCGFNATAPSTTSVVPPSNEPSCELINQQCCAHSSEPDCRCEP
CGPLLEDKIDYAFKLCGGLGIFFSFTEFVGVWLTVRYRNQKDPRGLPSAF
L*

BS28548.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:01:22
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp97E-PG 221 CG6323-PG 21..221 1..201 1065 100 Plus
Tsp97E-PD 221 CG6323-PD 21..221 1..201 1065 100 Plus
Tsp97E-PE 228 CG6323-PE 21..218 1..198 987 94.9 Plus
Tsp97E-PH 228 CG6323-PH 21..218 1..198 987 94.9 Plus
Tsp97E-PA 228 CG6323-PA 21..218 1..198 987 94.9 Plus