BS28550.complete Sequence
683 bp assembled on 2012-03-26
GenBank Submission: KX805343
> BS28550.complete
GAAGTTATCAGTCGACATGCCTCGCACCAAGATTACAGCTCGTCGTCAGG
CCCAGCGCCAGAAGGCTGATCGCGAAGAGAAAGTGCGCCTGTCCCAAATC
AAAATGGATTCGGCTCTGGAGAAGATCGATGAGATGAGCAAGCGCTACAA
GCAAGAGGTGGACAACCAAATTAAGGTGATCCGTGGTAGGACTGATAAGC
AGCTACTGCAAATGAAGATGCCAGAATTCTTGGCTCTCGGGTTTAAGACT
TTTGCCGAATTTCAGAGGGCAGCTATTAAGCCGCCCACAACTCGCAGTTT
GTCCATCAGTCGTGGTCGAACACGAACTCCGCAGAATGCCCTGCCACCGA
GGCTTCAGGCGCATTCGGTGGACAGGGCTCTGAGTGGCGACACCATGAGC
TTTGTGCGATGGCCCCGCGCCGGAGAGATGGTGCTCTCGAAGGCGGGAAG
CCCGCTGGCCGTCCAGATGCGTCCGGATCGCTATGCGGACGTCCACATTC
CCACCAGGGGCGGCGTGATCACCGTGAAACCGCACAAGATCAACACCGTG
AAGCGGGAAGTACTGATGCAGCTGGATGAGAACACACTCAACCAGGTGAA
GACACTGAATGCCAATCTCGGATTAATTGTGGACATGGCCAACAAACTGG
GCAAATTGAAACCGTAAAAGCTTTCTAGACCAT
BS28550.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:09:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| aust-RB | 651 | CG17009-PB | 1..651 | 17..667 | 3255 | 100 | Plus |
| aust-RA | 651 | CG17009-PA | 1..651 | 17..667 | 3255 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:09:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| aust-RB | 929 | CG17009-RB | 35..685 | 17..667 | 3255 | 100 | Plus |
| aust-RA | 889 | CG17009-RA | 35..685 | 17..667 | 3255 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:09:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 9250292..9250689 | 667..270 | 1990 | 100 | Minus |
| 2L | 23513712 | 2L | 9250753..9251008 | 272..17 | 1280 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 04:09:09 has no hits.
BS28550.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-26 11:13:22 Download gff for
BS28550.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| aust-RA | 35..683 | 17..665 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:11:21 Download gff for
BS28550.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| aust-RA | 35..683 | 17..665 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:20:59 Download gff for
BS28550.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| aust-RA | 35..683 | 17..665 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:20:59 Download gff for
BS28550.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 9250294..9250686 | 273..665 | 100 | <- | Minus |
| 2L | 9250753..9251008 | 17..272 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:11:21 Download gff for
BS28550.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 9250294..9250686 | 273..665 | 100 | <- | Minus |
| arm_2L | 9250753..9251008 | 17..272 | 100 | | Minus |
BS28550.pep Sequence
Translation from 16 to 666
> BS28550.pep
MPRTKITARRQAQRQKADREEKVRLSQIKMDSALEKIDEMSKRYKQEVDN
QIKVIRGRTDKQLLQMKMPEFLALGFKTFAEFQRAAIKPPTTRSLSISRG
RTRTPQNALPPRLQAHSVDRALSGDTMSFVRWPRAGEMVLSKAGSPLAVQ
MRPDRYADVHIPTRGGVITVKPHKINTVKREVLMQLDENTLNQVKTLNAN
LGLIVDMANKLGKLKP*
BS28550.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:02:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| aust-PB | 216 | CG17009-PB | 1..216 | 1..216 | 1086 | 100 | Plus |
| aust-PA | 216 | CG17009-PA | 1..216 | 1..216 | 1086 | 100 | Plus |
| borr-PA | 315 | CG4454-PA | 175..311 | 88..210 | 236 | 41.4 | Plus |
| borr-PB | 319 | CG4454-PB | 179..315 | 88..210 | 236 | 41.4 | Plus |
| borr-PA | 315 | CG4454-PA | 1..99 | 1..98 | 178 | 41 | Plus |
| borr-PB | 319 | CG4454-PB | 1..99 | 1..98 | 178 | 41 | Plus |
