BS28552.complete Sequence
1301 bp assembled on 2012-03-26
GenBank Submission: KX804688
> BS28552.complete
GAAGTTATCAGTCGACATGGCGACTGCTTTGGAACTGAGTCCAACCGAGA
TTCGCGGCCTGTGCCAGCGGTACTTTCATCAAGATGTTTCCAATTCGGAT
ACGGGGTTCGATATAGTCAACTATACTCTTAAGCCCACCTCGGATGCTCC
AGCCGGATACTTGGGCAGCCACCTCTACCTGCACGTCACTCTGAAGCTTC
ACAATTCCGAGGAGGTCCGGCAGCTCACATTCTTCTCGAAGTCGGCGCCC
GTGGGTAATGAGTCGCGAATGGAATACCTAGAGGATTTTGGAGTGTTCGA
AAAGGAAATCGCTGTCTACCAGAACGTTCTACCCGATCTTCACAAGGCCT
GTGCAGAAGTGGCGCCCAAGTGCTATTACGCGGACAAGAATCTACTGATC
TTTGAGAACCTCGCAGATCAGGGCTATCGAATGGGTGCTGGACGGGATGG
TCTGCTGACCTATGAGCAGCTCCATTGCTGTCTAAAAACCTTGGCCGCCA
TGCATGCTGGTTCCATAATCCAGGAACAGAGAACGGGACAAAAAATAGCA
CAGTCTCAGCCTAAATCAGTGGTGGAGAATGCCTATCCCAGTGATGTGTC
GCCGGAACATATGAGGATGGTGAATTTTCAAAATGCCTGTCTGGTGCTCA
AGGAGTTCATCAAACTAATACCCAAATATCAGTCCAAGTTGGATTACGTA
TTGGAAAACTTTACAGAAAAGATGTCCTTTATTTTTGAGGCCGTCAAGAC
CTCGGATGTGTACCAGAATACCATACTCCATGGCGATTTGTGGGCCAATA
ATATCATGTTCCAGTATGGCAGATATGGCGAGGTTCCACTGCAGTGCCGC
CTTGTGGACTTCCAGTTGGCCAGATATGCCCCACCTGTCCTCGATGTCCT
GACCGTTCTCACCATTCCCACTTCAAAAGAGTTCAGGGACGCCCATCTCA
GTGAACTTCTGGCGGAATACTACCGGTTCATGACCGAGTTCCTGAAGCGT
GCTGACTTGGATATAGCGCGTTTTATTCCAGAACAGACTTTCTATGAATC
CGTGCAAAAGTTTCGAAGTGTTGGCCTGATCGAAAGCTGTTTGTTCTGTC
ACCTGGTTATTCTACCACCTCACTGCACTCAGAAACTGACCAGTTCTGTG
GATGGCTTTAACGACTTTTTCACTAATAAACGCATAGAGATTTGCCTGGA
GGCCTTCAACACGGATGAGTTGTACAGAAGTCGGCTGGTCGACATGATTG
AAGACTTTGTAGATCAATTTGTTATAAATGTTTAGAAGCTTTCTAGACCA
T
BS28552.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:09:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9259-RC | 1269 | CG9259-PC | 1..1269 | 17..1285 | 6345 | 100 | Plus |
| CG9259-RB | 1269 | CG9259-PB | 1..1269 | 17..1285 | 6345 | 100 | Plus |
| CG9259-RA | 1269 | CG9259-PA | 1..1269 | 17..1285 | 6345 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:09:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9259-RC | 1466 | CG9259-RC | 129..1404 | 12..1287 | 6365 | 99.9 | Plus |
| CG9259-RB | 1353 | CG9259-RB | 16..1291 | 12..1287 | 6365 | 99.9 | Plus |
| CG9259-RA | 1453 | CG9259-RA | 16..1291 | 12..1287 | 6365 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:09:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 21089562..21090837 | 12..1287 | 6365 | 99.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 04:09:13 has no hits.
BS28552.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-26 11:13:23 Download gff for
BS28552.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9259-RA | 3..1271 | 17..1285 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:11:22 Download gff for
BS28552.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9259-RA | 21..1289 | 17..1285 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:20:59 Download gff for
BS28552.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9259-RA | 21..1289 | 17..1285 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:20:59 Download gff for
BS28552.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 21089567..21090835 | 17..1285 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:11:22 Download gff for
BS28552.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 21089567..21090835 | 17..1285 | 100 | | Plus |
BS28552.pep Sequence
Translation from 16 to 1284
> BS28552.pep
MATALELSPTEIRGLCQRYFHQDVSNSDTGFDIVNYTLKPTSDAPAGYLG
SHLYLHVTLKLHNSEEVRQLTFFSKSAPVGNESRMEYLEDFGVFEKEIAV
YQNVLPDLHKACAEVAPKCYYADKNLLIFENLADQGYRMGAGRDGLLTYE
QLHCCLKTLAAMHAGSIIQEQRTGQKIAQSQPKSVVENAYPSDVSPEHMR
MVNFQNACLVLKEFIKLIPKYQSKLDYVLENFTEKMSFIFEAVKTSDVYQ
NTILHGDLWANNIMFQYGRYGEVPLQCRLVDFQLARYAPPVLDVLTVLTI
PTSKEFRDAHLSELLAEYYRFMTEFLKRADLDIARFIPEQTFYESVQKFR
SVGLIESCLFCHLVILPPHCTQKLTSSVDGFNDFFTNKRIEICLEAFNTD
ELYRSRLVDMIEDFVDQFVINV*
BS28552.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:02:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9259-PC | 422 | CG9259-PC | 1..422 | 1..422 | 2208 | 100 | Plus |
| CG9259-PB | 422 | CG9259-PB | 1..422 | 1..422 | 2208 | 100 | Plus |
| CG9259-PA | 422 | CG9259-PA | 1..422 | 1..422 | 2208 | 100 | Plus |
| CG33511-PB | 415 | CG33511-PB | 27..410 | 33..421 | 367 | 28.6 | Plus |
| CG13813-PA | 430 | CG13813-PA | 24..346 | 40..355 | 308 | 28.4 | Plus |
