Clone BS28553 Report

Search the DGRC for BS28553

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:285
Well:53
Vector:pDNR-Dual
Associated Gene/TranscriptCG11629-RA
Protein status:BS28553.pep: full length peptide match
Sequenced Size:1424

Clone Sequence Records

BS28553.complete Sequence

1424 bp assembled on 2012-03-26

GenBank Submission: KX805136

> BS28553.complete
GAAGTTATCAGTCGACATGCTCAGCCTGAGGAATGGAATCTTCGCGGGCA
ATCTTCTCGGCAGCGGCTTTTGCCTTCAGCGATTTGCGCCCTGTGCCTGT
CGCTCTTCGCGAAAGCCTCCGGCGGGAAACTCCCCGAAGAACCCATACAA
GCAGCTGAACAATGACTCGGTGGAGGAGAAACGCCTGTCGGTCCTGATGG
AGCTGGGGTGTCGATGTCCGCAGAAGTCGCACAAGGAGCGTTGGTTCCTC
ACCAACCAGCGCATTATTTTGGCCCTGGCCACGACCCTGAATCGTCCGCC
GGATTTGGTGTCAGACTTTTTGCACACACTGACCCTCCAGAACTTTTCAG
AGATCCTTCATCCCGCCGAGACGGAGACCTTAAGCCCCTCTTGTAGAGTT
CCCTTTGTGAACTGCGGTGCCTGTGAGAACTTTATGAGAATTTTCGATAC
TCATGGGAATGTAAGGAGCCGCCTTAGCCAGGACTCACTGCAGCTACTAA
TGAGCGCCGTGCAAACTGTTTTGAAGCAATCTCCACCCACTGAGCTCCGT
GCATTTGATGCAGGCGTTAGCGGCCTACGAGGGACACTTAAAAGGGATTC
CATAGCGCGTAGAGCTGGTATCGATCACGACTCAATCGCTCGTCAAAACG
GCAGGAGGCGATTAAGAAACTCGGAAGCCAGGGCCTCAGAAAACAGAAGT
CATCTCAACACCGGCCTGGAGCAACGCACAGCAGGAGATCCTGGATATGT
TTTTGGATCCAGCCTTGAGTCCGCGGGCTTAGATGTCATGCACACGCCCG
AAAAATGGGTTTTCACGGATTCTTTAGCTTTAGAGCGGACCAGGCGGCTC
GCCAAATTGCTCATTCGCGTTAATGATAAGACTTATCTGACGCGCGATAC
TGAGAAACTAATAACTGCCATCAAAGACCTCAAATTGGACAGCAATGTCA
CAAATCCAAAAAAACAGCCGCCACGGCATAGCATCAAGGCCAATGTAAAT
TCCGATTCGTACTATGAAAGAGTCAAGGCTTCTGCTTCGAAAGCCGTGCT
CAAGAGCCACTCGGCACGCGGCTCGAAGAAAAGGAAGAAGGCCAGCGATG
TTGAGCCTGTTCCTAAGCGGACCACGAACCGAGTGTATTATGGCGATCCG
CTCCCGGTGCTCCTGCACGAACCATTTAATCGTGAAAAGCCGTGGACGTG
GTTGCGCCGACATCCCCAGCAGATGCGCATGGATGAAAAGGGTCAGGTGA
CACAGGGAAATATCCGTCGCTACCGGCGCCAAACCGTAGAGCAGATGATG
CAGAAAGCTAAGGAGCGATCATCGGTGATCACTGTGATCTCAACAGGTGA
CGAAAACGATTCCGTGAATGCGCAGCCCATGTTTGGTCAGGAAACTTCCG
GGAACTAAAAGCTTTCTAGACCAT

BS28553.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:09:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG11629-RA 1392 CG11629-PA 1..1392 17..1408 6960 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:09:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG11629-RA 1624 CG11629-RA 29..1422 17..1410 6970 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:09:16
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 21896868..21898261 1410..17 6970 100 Minus
Blast to na_te.dros performed on 2014-11-28 04:09:16 has no hits.

BS28553.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-26 11:13:23 Download gff for BS28553.complete
Subject Subject Range Query Range Percent Splice Strand
CG11629-RA 29..1418 17..1406 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:11:24 Download gff for BS28553.complete
Subject Subject Range Query Range Percent Splice Strand
CG11629-RA 29..1418 17..1406 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:21:01 Download gff for BS28553.complete
Subject Subject Range Query Range Percent Splice Strand
CG11629-RA 29..1418 17..1406 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:21:01 Download gff for BS28553.complete
Subject Subject Range Query Range Percent Splice Strand
2L 21896872..21898261 17..1406 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:11:24 Download gff for BS28553.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 21896872..21898261 17..1406 100   Minus

BS28553.pep Sequence

Translation from 16 to 1407

> BS28553.pep
MLSLRNGIFAGNLLGSGFCLQRFAPCACRSSRKPPAGNSPKNPYKQLNND
SVEEKRLSVLMELGCRCPQKSHKERWFLTNQRIILALATTLNRPPDLVSD
FLHTLTLQNFSEILHPAETETLSPSCRVPFVNCGACENFMRIFDTHGNVR
SRLSQDSLQLLMSAVQTVLKQSPPTELRAFDAGVSGLRGTLKRDSIARRA
GIDHDSIARQNGRRRLRNSEARASENRSHLNTGLEQRTAGDPGYVFGSSL
ESAGLDVMHTPEKWVFTDSLALERTRRLAKLLIRVNDKTYLTRDTEKLIT
AIKDLKLDSNVTNPKKQPPRHSIKANVNSDSYYERVKASASKAVLKSHSA
RGSKKRKKASDVEPVPKRTTNRVYYGDPLPVLLHEPFNREKPWTWLRRHP
QQMRMDEKGQVTQGNIRRYRRQTVEQMMQKAKERSSVITVISTGDENDSV
NAQPMFGQETSGN*

BS28553.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:02:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG11629-PA 463 CG11629-PA 1..463 1..463 2402 100 Plus