BS28554.complete Sequence
1295 bp assembled on 2012-03-26
GenBank Submission: KX800794
> BS28554.complete
GAAGTTATCAGTCGACATGCGTTTGCTCATGGTAATTGCAATTTTAATAT
TCGCAATGCCAATGACTGGATTCGGCTGGGCGGAGGGCACCAACATCCTT
CTCGATCCAAATCTAATGTGCAAAAAGACACGTCGTCTGCGCGGCAAGTT
GGCCGAAATCTGTCGGCACGATTCGGCCCTGCTCAAAGAGATCATCATCA
ATGGCATCAACCTGGGCTTCCGCGAATGCGAGTTTCAATTCCGCAACCGC
CGGTGGAACTGCACTGTTCTGCGCAAGAGCATGAGGAAAATCTTAATGCG
CGATTCCCGAGAGACGGGTTTCGTGAACGCGATCACAGCCGCGGGAGTGA
CCTACGCCGTGACGAAGGCCTGCACGATGGGCCAGCTGGTGGAGTGCTCC
TGCGACAAGGCGCATATGCGCAGAAACGGCGGCCAGCCACAGATGGTGAC
GGCGGCCACCGCAGAGGCGGCACTGGAGCGGCAGCAACAGGCGGCGATGC
TGCGACAACAAATGCCGCTGCAGGATCAACATCCCAGTCAGCGGCTGAGT
CGCATGAACAACGCCAGCACCATGACCGATATAGCTCCAGTGGAGCATAG
AGGCGGGCGAAATCGCAGGCCCGGCGGAAGGCGGGGGCGCCGCAAGTTCT
GGGACAACATTAAGTTTCCCGAGGGGCAGTGGGAGTGGGGCGGATGCAGT
GACAACGTTAACTTTGGCCTTCGTCACTCGCGCGTTTTCCTTGACGCCAA
GCAAAGGCAAAGGCGTAGCGATCTGGGCACGCTGGTTAAGTTCCACAATA
ATAACGCAGGTCGATTGGCCATTCGCGATGCCATGCGGCTGGAGTGCAAG
TGTCACGGGCTTTCCGGCTCCTGCACGGTGAAGACCTGCTGGCTGAAGAT
GCCTCCGTTCCGAGAAGTGGCAGGACGACTGCGAGACCGGTATGACAGTG
CTAGGAAGGTGACGTTGCGCAACGACGGGAACAGCTTCATGCCGGAGAGT
CCGCACGCGAGGCCAGCGAACAAGTACCAGTTGGTCTTCGCAGACGATTC
GCCCGACTTTTGCACACCCAACTCCAAGACGGGAGCACTCGGAACTCAGG
GCAGGGAGTGCAATGTGACCAGTTCCGGATCGGATCGATGCGATCGCTTG
TGCTGCAATCGAGGACACACCCGCAGGATTGTGGAGGAGCAAACCAACTG
CAAGTGCGTCTTTAAGTGGTGCTGCGAGGTGACCTGCGAAAAGTGCCTGG
AACACCGGGCGGTCAACACCTGCCTCTGAAAGCTTTCTAGACCAT
BS28554.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:09:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Wnt6-RC | 1263 | CG4969-PC | 1..1263 | 17..1279 | 6315 | 100 | Plus |
| Wnt6-RB | 1263 | CG4969-PB | 1..1263 | 17..1279 | 6315 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:09:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Wnt6-RC | 2837 | CG4969-RC | 1322..2593 | 8..1279 | 6330 | 99.8 | Plus |
| Wnt6-RB | 2855 | CG4969-RB | 1322..2593 | 8..1279 | 6330 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:09:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7351182..7351698 | 302..818 | 2585 | 100 | Plus |
| 2L | 23513712 | 2L | 7351818..7352280 | 817..1279 | 2315 | 100 | Plus |
| 2L | 23513712 | 2L | 7342836..7343060 | 78..302 | 1125 | 100 | Plus |
| 2L | 23513712 | 2L | 7335035..7335106 | 8..79 | 330 | 97.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 04:09:20 has no hits.
BS28554.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-26 11:13:24 Download gff for
BS28554.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Wnt6-RB | 244..1505 | 17..1278 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:11:26 Download gff for
BS28554.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Wnt6-RB | 1331..2592 | 17..1278 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:21:02 Download gff for
BS28554.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Wnt6-RB | 1331..2592 | 17..1278 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:21:02 Download gff for
BS28554.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7335044..7335105 | 17..78 | 100 | -> | Plus |
| 2L | 7342837..7343060 | 79..302 | 100 | -> | Plus |
| 2L | 7351183..7351697 | 303..817 | 100 | -> | Plus |
| 2L | 7351819..7352279 | 818..1278 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:11:26 Download gff for
BS28554.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7335044..7335105 | 17..78 | 100 | -> | Plus |
| arm_2L | 7342837..7343060 | 79..302 | 100 | -> | Plus |
| arm_2L | 7351183..7351697 | 303..817 | 100 | -> | Plus |
| arm_2L | 7351819..7352279 | 818..1278 | 100 | | Plus |
BS28554.pep Sequence
Translation from 16 to 1278
> BS28554.pep
MRLLMVIAILIFAMPMTGFGWAEGTNILLDPNLMCKKTRRLRGKLAEICR
HDSALLKEIIINGINLGFRECEFQFRNRRWNCTVLRKSMRKILMRDSRET
GFVNAITAAGVTYAVTKACTMGQLVECSCDKAHMRRNGGQPQMVTAATAE
AALERQQQAAMLRQQMPLQDQHPSQRLSRMNNASTMTDIAPVEHRGGRNR
RPGGRRGRRKFWDNIKFPEGQWEWGGCSDNVNFGLRHSRVFLDAKQRQRR
SDLGTLVKFHNNNAGRLAIRDAMRLECKCHGLSGSCTVKTCWLKMPPFRE
VAGRLRDRYDSARKVTLRNDGNSFMPESPHARPANKYQLVFADDSPDFCT
PNSKTGALGTQGRECNVTSSGSDRCDRLCCNRGHTRRIVEEQTNCKCVFK
WCCEVTCEKCLEHRAVNTCL*
BS28554.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:02:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Wnt6-PC | 420 | CG4969-PC | 1..420 | 1..420 | 2276 | 100 | Plus |
| Wnt6-PB | 420 | CG4969-PB | 1..420 | 1..420 | 2276 | 100 | Plus |
| Wnt2-PB | 325 | CG1916-PB | 112..324 | 218..419 | 488 | 39.5 | Plus |
| Wnt2-PA | 352 | CG1916-PA | 139..351 | 218..419 | 488 | 39.5 | Plus |
| Wnt10-PB | 483 | CG4971-PB | 69..323 | 28..322 | 390 | 30.7 | Plus |
| Wnt2-PB | 325 | CG1916-PB | 30..112 | 63..141 | 163 | 41 | Plus |
| Wnt2-PA | 352 | CG1916-PA | 57..139 | 63..141 | 163 | 41 | Plus |
