Clone BS28555 Report

Search the DGRC for BS28555

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:285
Well:55
Vector:pDNR-Dual
Associated Gene/TranscriptCG12947-RB
Protein status:BS28555.pep: full length peptide match
Sequenced Size:908

Clone Sequence Records

BS28555.complete Sequence

908 bp assembled on 2012-03-26

GenBank Submission: KX804895

> BS28555.complete
GAAGTTATCAGTCGACATGAGATTGATCTGGCTGCAGCTCCTGGCTGCTG
GGGTTGCTCTCTATCTGGCAAACGGTTGTGCAACGGCCGCCAAGGCATCC
ACAAGCCGCGGAGTTGCACAATACAAGCTCCCGCTCCCTGCTCCATTGCC
AGACCACGAATCTGTCGCGGTTTCAGGCGCGGATCAGGCTAGGCGACAGC
AGCAGCAGCAGCAGAAGGGAGCATCCAACCAGCGAAGGCGCACTCAGGTC
GTGCGGCGGCGCAGGCCCTCCTCTACAACAACTACTTCATCCACCTCAAC
CACAACGACAACCACATCGACAACAACTACAACGACGACAACAACAACTC
CGCGTCCCAGCCTGGCCAACGGCTTCAACTTCTTTAATCGGAACTTCTGG
AGTTTCGGCCAGCAGAGTCTGGTGGCAGTGCGTCCGCCCACCAAGCAGGC
CCATCCGCCGAAAAAGTTTAGTCCCAAGGACGAAAAGTCCGGCCAACGAA
AAGTGGCCAAGACCACTAGGAAACCGATGGATCAGAGAACGAGTACAACT
AGTCGAAGCGCAACAACAACTAGCACACAAAAACCCACTACAGATGGACC
CTTTCGCATTGCACTGCCCACCTTGAACTTCCCACGCGACAACCAGGATA
AGAACAGGGATAGGGAAACGGAGAAGGGCAAGAGGTCGGCTGCCGAGCTG
CGCTTGAGGTTCGATTGTCCGCGGGAGAACGAGGTGAGGTTCCAGCTATT
CCCCAAGATCTGCAAGGCGGATCGAGACTGTGCCGTGTGGCAACGGGATG
AGCTGTGCTGTGATATCTTTGGAGCAAGCAGCTGTGTCTCTGGCGTTCCA
AAGCCGCTAGAGGAGACTCCACATGCTCGTAAGTGGGTTTAAAAGCTTTC
TAGACCAT

BS28555.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:09:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG12947-RC 1275 CG12947-PC 1..862 17..878 4310 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:09:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG12947-RC 1695 CG12947-RC 124..985 17..878 4310 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:09:23
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9781697..9782241 348..892 2725 100 Plus
3R 32079331 3R 9780187..9780517 17..347 1655 100 Plus
Blast to na_te.dros performed 2014-11-28 04:09:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2803..2990 192..381 142 57 Plus

BS28555.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-26 11:13:25 Download gff for BS28555.complete
Subject Subject Range Query Range Percent Splice Strand
CG12947-RB 124..997 17..890 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:11:28 Download gff for BS28555.complete
Subject Subject Range Query Range Percent Splice Strand
CG12947-RC 124..985 17..878 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:21:03 Download gff for BS28555.complete
Subject Subject Range Query Range Percent Splice Strand
CG12947-RC 124..985 17..878 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:21:03 Download gff for BS28555.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9780187..9780517 17..347 100 -> Plus
3R 9781697..9782239 348..890 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:11:28 Download gff for BS28555.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5605909..5606239 17..347 100 -> Plus
arm_3R 5607419..5607961 348..890 100   Plus

BS28555.pep Sequence

Translation from 16 to 891

> BS28555.pep
MRLIWLQLLAAGVALYLANGCATAAKASTSRGVAQYKLPLPAPLPDHESV
AVSGADQARRQQQQQQKGASNQRRRTQVVRRRRPSSTTTTSSTSTTTTTT
STTTTTTTTTTPRPSLANGFNFFNRNFWSFGQQSLVAVRPPTKQAHPPKK
FSPKDEKSGQRKVAKTTRKPMDQRTSTTSRSATTTSTQKPTTDGPFRIAL
PTLNFPRDNQDKNRDRETEKGKRSAAELRLRFDCPRENEVRFQLFPKICK
ADRDCAVWQRDELCCDIFGASSCVSGVPKPLEETPHARKWV*

BS28555.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:03:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG12947-PC 424 CG12947-PC 1..287 1..287 1500 100 Plus