BS28555.complete Sequence
908 bp assembled on 2012-03-26
GenBank Submission: KX804895
> BS28555.complete
GAAGTTATCAGTCGACATGAGATTGATCTGGCTGCAGCTCCTGGCTGCTG
GGGTTGCTCTCTATCTGGCAAACGGTTGTGCAACGGCCGCCAAGGCATCC
ACAAGCCGCGGAGTTGCACAATACAAGCTCCCGCTCCCTGCTCCATTGCC
AGACCACGAATCTGTCGCGGTTTCAGGCGCGGATCAGGCTAGGCGACAGC
AGCAGCAGCAGCAGAAGGGAGCATCCAACCAGCGAAGGCGCACTCAGGTC
GTGCGGCGGCGCAGGCCCTCCTCTACAACAACTACTTCATCCACCTCAAC
CACAACGACAACCACATCGACAACAACTACAACGACGACAACAACAACTC
CGCGTCCCAGCCTGGCCAACGGCTTCAACTTCTTTAATCGGAACTTCTGG
AGTTTCGGCCAGCAGAGTCTGGTGGCAGTGCGTCCGCCCACCAAGCAGGC
CCATCCGCCGAAAAAGTTTAGTCCCAAGGACGAAAAGTCCGGCCAACGAA
AAGTGGCCAAGACCACTAGGAAACCGATGGATCAGAGAACGAGTACAACT
AGTCGAAGCGCAACAACAACTAGCACACAAAAACCCACTACAGATGGACC
CTTTCGCATTGCACTGCCCACCTTGAACTTCCCACGCGACAACCAGGATA
AGAACAGGGATAGGGAAACGGAGAAGGGCAAGAGGTCGGCTGCCGAGCTG
CGCTTGAGGTTCGATTGTCCGCGGGAGAACGAGGTGAGGTTCCAGCTATT
CCCCAAGATCTGCAAGGCGGATCGAGACTGTGCCGTGTGGCAACGGGATG
AGCTGTGCTGTGATATCTTTGGAGCAAGCAGCTGTGTCTCTGGCGTTCCA
AAGCCGCTAGAGGAGACTCCACATGCTCGTAAGTGGGTTTAAAAGCTTTC
TAGACCAT
BS28555.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:09:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12947-RC | 1275 | CG12947-PC | 1..862 | 17..878 | 4310 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:09:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12947-RC | 1695 | CG12947-RC | 124..985 | 17..878 | 4310 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:09:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9781697..9782241 | 348..892 | 2725 | 100 | Plus |
3R | 32079331 | 3R | 9780187..9780517 | 17..347 | 1655 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 04:09:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2803..2990 | 192..381 | 142 | 57 | Plus |
BS28555.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-26 11:13:25 Download gff for
BS28555.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12947-RB | 124..997 | 17..890 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:11:28 Download gff for
BS28555.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12947-RC | 124..985 | 17..878 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:21:03 Download gff for
BS28555.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12947-RC | 124..985 | 17..878 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:21:03 Download gff for
BS28555.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9780187..9780517 | 17..347 | 100 | -> | Plus |
3R | 9781697..9782239 | 348..890 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:11:28 Download gff for
BS28555.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5605909..5606239 | 17..347 | 100 | -> | Plus |
arm_3R | 5607419..5607961 | 348..890 | 100 | | Plus |
BS28555.pep Sequence
Translation from 16 to 891
> BS28555.pep
MRLIWLQLLAAGVALYLANGCATAAKASTSRGVAQYKLPLPAPLPDHESV
AVSGADQARRQQQQQQKGASNQRRRTQVVRRRRPSSTTTTSSTSTTTTTT
STTTTTTTTTTPRPSLANGFNFFNRNFWSFGQQSLVAVRPPTKQAHPPKK
FSPKDEKSGQRKVAKTTRKPMDQRTSTTSRSATTTSTQKPTTDGPFRIAL
PTLNFPRDNQDKNRDRETEKGKRSAAELRLRFDCPRENEVRFQLFPKICK
ADRDCAVWQRDELCCDIFGASSCVSGVPKPLEETPHARKWV*
BS28555.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:03:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12947-PC | 424 | CG12947-PC | 1..287 | 1..287 | 1500 | 100 | Plus |