BS28556.complete Sequence
1493 bp assembled on 2012-04-06
GenBank Submission: KX803483
> BS28556.complete
GAAGTTATCAGTCGACATGACAACCTCGATGCAGCCGAGCAAGTACACGG
GCCTGGTCGCCGACCTGATGCCCAACATCCGGGCGATGAAGTACTCCGGC
CTGTTCATGCACAACTTCACGGGCGGCAGTGCCTTCATGAAGAAGGTGTA
CTCCTCCGTGCACCTGGTGTTCCTCCTCATGCAGTTCACCTTCATCCTGG
TCAACATGGCCCTGAACGCCGAGGAGGTCAACGAGCTGTCGGGCAACACG
ATCACGACCCTCTTCTTCACCCACTGCATCACGAAGTTTATCTACCTGGC
TGTTAACCAGAAGAATTTCTACAGAACATTGAATATATGGAACCAGGTGA
ACACGCATCCCTTGTTCGCCGAGTCGGATGCTCGTTACCATTCGATCGCA
CTGGCGAAGATGAGGAAGCTGTTCTTTCTGGTGATGCTGACCACAGTCGC
CTCGGCCACCGCCTGGACCACGATCACCTTCTTTGGCGACAGCGTAAAAA
TGGTGGTGGACCATGAGACGAACTCCAGCATCCCGGTGGAGATACCCCGG
CTGCCGATTAAGTCCTTCTACCCGTGGAACGCCAGCCACGGCATGTTCTA
CATGATCAGCTTTGCCTTTCAGATCTACTACGTGCTCTTCTCGATGATCC
ACTCCAATCTATGCGACGTGATGTTCTGCTCTTGGCTGATATTCGCCTGC
GAGCAGCTGCAGCACTTGAAGGGCATCATGAAGCCGCTGATGGAGCTGTC
CGCCTCGCTGGACACCTACAGGCCCAACTCGGCGGCCCTCTTCAGGTCCC
TGTCGGCCAACTCCAAGTCGGAGCTAATTCATAATGAAGAAAAGGATCCC
GGCACCGACATGGACATGTCGGGCATCTACAGCTCGAAAGCGGATTGGGG
CGCTCAGTTTCGAGCACCCTCGACACTGCAGTCCTTTGGCGGGAACGGGG
GCGGAGGCAACGGGTTGGTGAACGGCGCTAATCCCAACGGGCTGACCAAA
AAGCAGGAGATGATGGTGCGCAGTGCCATCAAGTACTGGGTCGAGCGGCA
CAAGCACGTGGTGCGACTGGTGGCTGCCATCGGCGATACTTACGGAGCCG
CCCTCCTCCTCCACATGCTGACCTCGACCATCAAGCTGACCCTGCTGGCA
TACCAGGCCACCAAAATCAACGGAGTGAATGTCTACGCCTTCACAGTCGT
CGGATACCTAGGATACGCGCTGGCCCAGGTGTTCCACTTTTGCATCTTTG
GCAATCGTCTGATTGAAGAGAGTTCATCCGTCATGGAGGCCGCCTACTCG
TGCCACTGGTACGATGGCTCCGAGGAGGCCAAGACCTTCGTCCAGATCGT
GTGCCAGCAGTGCCAGAAGGCGATGAGCATATCGGGAGCGAAATTCTTCA
CCGTCTCCCTGGATTTGTTTGCTTCGGTTCTGGGTGCCGTCGTCACCTAC
TTTATGGTGCTGGTGCAGCTCAAGTAAAAGCTTTCTAGACCAT
BS28556.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:22:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Orco-RB | 1461 | CG10609-PB | 1..1461 | 17..1477 | 7305 | 100 | Plus |
| Orco-RA | 1461 | CG10609-PA | 1..1461 | 17..1477 | 7305 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:22:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Orco-RB | 1743 | CG10609-RB | 14..1474 | 17..1477 | 7305 | 100 | Plus |
| Orco-RA | 1929 | CG10609-RA | 200..1660 | 17..1477 | 7305 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:22:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5409031..5409548 | 839..322 | 2590 | 100 | Minus |
| 3R | 32079331 | 3R | 5409616..5409923 | 324..17 | 1540 | 100 | Minus |
| 3R | 32079331 | 3R | 5408708..5408935 | 1065..838 | 1140 | 100 | Minus |
| 3R | 32079331 | 3R | 5408088..5408293 | 1270..1065 | 1030 | 100 | Minus |
| 3R | 32079331 | 3R | 5407568..5407728 | 1429..1269 | 805 | 100 | Minus |
| 3R | 32079331 | 3R | 5407452..5407503 | 1477..1426 | 260 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 04:22:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gypsy10 | 6006 | gypsy10 GYPSY10 6006bp | 2432..2480 | 343..296 | 125 | 75.5 | Minus |
BS28556.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-06 13:46:49 Download gff for
BS28556.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Or83b-RB | 14..1472 | 17..1475 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:17:32 Download gff for
BS28556.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Orco-RA | 200..1658 | 17..1475 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:27:06 Download gff for
BS28556.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Orco-RA | 200..1658 | 17..1475 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:27:06 Download gff for
BS28556.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5409616..5409923 | 17..324 | 100 | | Minus |
| 3R | 5407571..5407726 | 1271..1426 | 100 | <- | Minus |
| 3R | 5408088..5408292 | 1066..1270 | 100 | <- | Minus |
| 3R | 5408708..5408933 | 840..1065 | 100 | <- | Minus |
| 3R | 5409031..5409545 | 325..839 | 100 | <- | Minus |
| 3R | 5407454..5407502 | 1427..1475 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:17:32 Download gff for
BS28556.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1235338..1235645 | 17..324 | 100 | | Minus |
| arm_3R | 1233176..1233224 | 1427..1475 | 100 | <- | Minus |
| arm_3R | 1233293..1233448 | 1271..1426 | 100 | <- | Minus |
| arm_3R | 1233810..1234014 | 1066..1270 | 100 | <- | Minus |
| arm_3R | 1234430..1234655 | 840..1065 | 100 | <- | Minus |
| arm_3R | 1234753..1235267 | 325..839 | 100 | <- | Minus |
BS28556.pep Sequence
Translation from 16 to 1476
> BS28556.pep
MTTSMQPSKYTGLVADLMPNIRAMKYSGLFMHNFTGGSAFMKKVYSSVHL
VFLLMQFTFILVNMALNAEEVNELSGNTITTLFFTHCITKFIYLAVNQKN
FYRTLNIWNQVNTHPLFAESDARYHSIALAKMRKLFFLVMLTTVASATAW
TTITFFGDSVKMVVDHETNSSIPVEIPRLPIKSFYPWNASHGMFYMISFA
FQIYYVLFSMIHSNLCDVMFCSWLIFACEQLQHLKGIMKPLMELSASLDT
YRPNSAALFRSLSANSKSELIHNEEKDPGTDMDMSGIYSSKADWGAQFRA
PSTLQSFGGNGGGGNGLVNGANPNGLTKKQEMMVRSAIKYWVERHKHVVR
LVAAIGDTYGAALLLHMLTSTIKLTLLAYQATKINGVNVYAFTVVGYLGY
ALAQVFHFCIFGNRLIEESSSVMEAAYSCHWYDGSEEAKTFVQIVCQQCQ
KAMSISGAKFFTVSLDLFASVLGAVVTYFMVLVQLK*
BS28556.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:13:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Orco-PB | 486 | CG10609-PB | 1..486 | 1..486 | 2523 | 100 | Plus |
| Orco-PA | 486 | CG10609-PA | 1..486 | 1..486 | 2523 | 100 | Plus |
| Or85f-PA | 392 | CG16755-PA | 222..392 | 316..484 | 175 | 25 | Plus |
| Or22c-PA | 402 | CG15377-PA | 236..398 | 318..482 | 163 | 25.1 | Plus |
| Or67c-PA | 404 | CG14156-PA | 259..397 | 342..482 | 159 | 26.2 | Plus |
